BAC Information

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BAC

Clone NameMSMg01-235M06
Chromosome17 (Build37)
Map Location 59,271,043 - 59,271,327
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235M06.T7 (MSMg01no235_m06.b1)MSMg01-235M06.TJ (MSMg01no235_m06.g1)
ACCAG401236AG401237
length754752
length of high quality
(start - end)
325 (46 - 370)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no235_m06.b1 PHD_FILE: MSMg01no235_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:10 2005CHROMAT_FILE: MSMg01no235_m06.g1 PHD_FILE: MSMg01no235_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCAGAATTTCAAAGAAGAGGTAATACAAATACTCCTCAAACTA
TCCACTAAATAAAAACATAAGGAACACTTTCTAATTATTCTATGAGGGCA
CAGTTATACTAATACTGAAACCACACAAAGACTCAACAAAGAAAGAAAAA
ATCAGATTAATTTCACATATGAACATCAATGCAAAAATATTCAATAAAAT
TCTCACAAACAGAATCTAGGAACACATCCAAAGCATCACTACCCACAGTC
AAGCAGGTTTCAACCCAGGGACACAGGGGGGATTCAAAAAAATCCATAAT
ATCTTCCTCTATCTATAAAAGTGACACACCAAAGAACACACAATTATCTT
ATTAGATGCTGAAAAAGTGGACAATAAAAACCCAACAGGCATTGATGATA
AAAGTTTTGGAAAGATCAGTGATTCAATGCATATACTTGAATGTAATAAA
AGCAATACAGCAAGTCAATAGGTAACATCAAATTAAATGTAAAGAAATAT
GAAGCAATCCCACTAAAATCAGGGACAAGAGAAGGCTGACAATTCTCCCC
ATATCTATTCAATATAGTACTCGAAGTTCTAGCTAGAGAACAAAAGAAGA
TCAGGGGGATAAGAATTAGAAAGAAGTCAAGGTATCACTATTCAAGGATG
ATATGATAGTATAAATAAGCAACCCACAAAATTCTACCATTCTCCTACAG
CTGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGTCTGTGATTTTTCACTATG
TGTCTAAAATCAGGCTTAATGTACATAGTGAAACGTATGGAGACAAAAAG
AGGAAGTTTGGGCAAGTTGATAGCAAGCCCTCCTACCCAGGGTGCAAATA
CTGCTTCCATTATTTTCTTTATTTTTATAACGATAGGTCTTTGTTTTACA
TCTGTTTTAAGAAGATGATTATCGGTGGTACATCGATCAAGTTCCAAGTT
TCTATTCTGGAGGAATGAATTAAAAAAAAATGATGAAGATTTCTTTTTTT
TTTTTTTAATTAGGTAGTTTTCTCATCTACCTTTCCAATGCTATCCCAAA
AGTCCCCCATACCCTCCCACCCACTCCCCTACCCACCCACTCCCACTTTT
TGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGTTTCCAAGTCCAAT
GGGCCTCTCTTTCCAGTGATGGCCGTCTAGGCCATCTTTTGATACATATG
CAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCC
ACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC
CTCTATTGGGGGCCCTGTAATCCATCCAATAGCTGACTGTGAGCATCCAC
TTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACTTCT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_m06.g1 MSMg01no235_m06.g1 CHROMAT_FILE:
MSMg01no235_m06.g1 PHD_FILE: MSMg01no235_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:10 2005
         (291 letters)



>mm_chr17_59270843_59271531
          Length = 689

 Score =  511 bits (264), Expect = e-149
 Identities = 282/290 (97%), Gaps = 5/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagtctgtgatttttcactatgtgtctaaaatcaggcttaatgtacatagtgaaacgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aatagtctgtgatttttcactatgtgtctaaaatcaggcttaatgtacatagtgaaacat 260

                                                                       
Query: 61  atggagacaaaaagaggaagtttgggcaagttgatagcaagccctcctacccagggtgca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggagacaaaaagagggagtttgggcaagttgatagcaagccctcctacccagggtgca 320

                                                                       
Query: 121 aatactgcttccattattttctttatttttataacgataggtctttgttttacatctgtt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aatactgcttccattattttctttatttttataatgataggtctttgttttacatctgtt 380

                                                                       
Query: 181 ttaagaagatgattatcggtggtacatcgatcaagttccaagtttctattctggaggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagaagatgattatcggtggtacatcgatcaagttccaagtttctattctggaggaat 440

                                                             
Query: 241 gaattaaaaaaaaatgatgaagatttcttttttttttttttaattaggta 290
           ||||||||||||  ||||||||||||||||||||||||   |||||||||
Sbjct: 441 gaattaaaaaaa--tgatgaagatttcttttttttttt---aattaggta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)