Query= MSMg01no235_p20.b1 MSMg01no235_p20.b1 CHROMAT_FILE:
MSMg01no235_p20.b1 PHD_FILE: MSMg01no235_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:26 2005
(318 letters)
>mm_chr17_63055843_63056566
Length = 724
Score = 569 bits (294), Expect = e-166
Identities = 311/320 (97%), Gaps = 6/320 (1%)
Strand = Plus / Plus
Query: 5 gaattctcaggcagagccggaagccagcaagtaaccccctgaggtgcaccagcataatgt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggcagagctggaagccagcaagtaaccccctgaggtgcaccagcataatgt 264
Query: 65 tttaagtttgctggatgacagacaaacagccagccccgttactactcaatgaatc----- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaagtttgctggatgacagacaaacagccagccccgttactactcaatgaatcgcccc 324
Query: 120 -ccccccccttttcttccagggcagaaaatgtttttggtagaattggtacaggcgaagga 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccccccccttttcttccagggcagaaaatgtttttggtagaattggtacaggcgaagga 384
Query: 179 gtgaattgatgttagctttttgtatagggacaagaataatcgtgaccctacctgcttccc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgaattgatgttagctttttgtatagggacaagaataatcgtgaccctacctgcttccc 444
Query: 239 atgggttatgtttagaaggtacagacactcactcactctgtttttagactataggggacc 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggattatgtttagaaggtacagacactcactcactctgtttttagactataggggacc 504
Query: 299 attcggaaccaggtctcaca 318
|||||||||||||||||||
Sbjct: 505 gttcggaaccaggtctcaca 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 724
Length adjustment: 9
Effective length of query: 309
Effective length of database: 715
Effective search space: 220935
Effective search space used: 220935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_p20.g1 MSMg01no235_p20.g1 CHROMAT_FILE:
MSMg01no235_p20.g1 PHD_FILE: MSMg01no235_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:26 2005
(292 letters)
>mm_chr17_63243139_63243830
Length = 692
Score = 553 bits (286), Expect = e-162
Identities = 289/290 (99%)
Strand = Plus / Minus
Query: 1 agcatgttatgcatctgacaggagaccaggtatgatatttgatagaaataatttgatagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agcatgttatgcatctgacaggagaccaggtatgatatttgatagaaataatttgatagc 431
Query: 61 gcaaattttgcgagaatgatatgatatgcttttatgcatacagaaaattgatcatttgta 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gcaaattttgcaagaatgatatgatatgcttttatgcatacagaaaattgatcatttgta 371
Query: 121 actgtgggttagtatgaaagtagcaagttgcaatactgcctttaaaaccacctttgtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 actgtgggttagtatgaaagtagcaagttgcaatactgcctttaaaaccacctttgtctg 311
Query: 181 attctggatggagatcatcatcttaaatggcctttctaagataccatggcaaaactaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 attctggatggagatcatcatcttaaatggcctttctaagataccatggcaaaactaaga 251
Query: 241 accagacaaatttacccttccaagtaagagaaaagcctgttgctttctgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 accagacaaatttacccttccaagtaagagaaaagcctgttgctttctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
