BAC Information

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BAC

Clone NameMSMg01-236L02
Chromosome17 (Build37)
Map Location 82,153,188 - 82,153,454
singlet/doubletsinglet
Overlap genenone
Upstream geneC230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236L02.T7 (MSMg01no236_l02.b1)MSMg01-236L02.TJ (MSMg01no236_l02.g1)
ACCAG401875AG401876
length822791
length of high quality
(start - end)
89 (125 - 213)267 (127 - 393)
definitionCHROMAT_FILE: MSMg01no236_l02.b1 PHD_FILE: MSMg01no236_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:19 2005CHROMAT_FILE: MSMg01no236_l02.g1 PHD_FILE: MSMg01no236_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTCCCCCCTTCCTTCTCCCCCCTGCCACTCCCTCCTCCCCTTCTTT
CCTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATCC
GCGGTATTCACCAGCGATTTCCATTATATACTCTTTGAATGATGTTTACG
ATCTAATAATCTCTCACCAATTTTATTATCCTTCCTGCCCTAGTTAGGGT
TTCTATGGTTGTAATGGAACACCATGACCAACAGCAAGCTGGATAGGAAA
GGGTATCTATTTATTTATTTATTTATTTATTTATTTATCTATTTATTTAT
TTTTATTCCCACATTATTTAACATCACTGATAGATGCCACAACAGGAACT
CATGTATGCTCTGGAATCTATATGTGCCGGTTATTCTTAGGTCATACATG
CCTGCTGATTATTGCCTTGCTAATTATGCCTTACTCTGTCTTCTTTCTTA
TACAATCTAGAACTTACTAATCTCAGAATGGAACCAAACACAATTTATCT
GTTCCCTCCCTTTTTATTATTGATTTTCCAAAACCACTCTACATTTTTTT
TTTATGTTACCATTTCCTAATTGAGGCCTACTCCCCTTATATTTTTCTCT
CCCTCCCCCTTGACCCTGATTTATTTTTTGTTTTTCCTAATTTATCTCTC
ACATTCAACGATTTGTTTTCACTCGACTCTCTCTTCCTTTTTTTTTTTTC
AGCTCTTATCTTCGCTCGTTTTGTTTTTTTCTCCCCCTTTTTCTCCCTCT
CTTGTTCCTCCTCCCCCCTGCCTTTCTTTTTTGTTTTTTAGTTGGTTTAC
CGTTTTTTCTCTCCACCTTTTN
CCCCTTTTTCCTTTTCCCTTCTTATTTACCTTCCTTTCCCAATNCNNCCT
TCTATGACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGAAGGACAAAAGAGTTTTT
TAAAGCTAAGAGAGCCAATGTCTGTGTCCCATAATTAACGGTTCCCTTCT
CTGCTACCAGCATGTTCAAAACCATCAGATTTGCCATTTTTAAAAGGCAG
TAACTTCAAAACGTATAGTAGCTCAATATAATATCTGGCAACTGAAATTA
ACATGGTGAAGGTAAAGAATAGTCCCATCAACATATGGATGCATTATGCT
GCCTCTTTTCAACCCCAAACTCTTCGCTGTTACATTCACATTAACCAGTG
GCAAGCCCTAATGCACCTTTTTTTTGCACCCCCCCCCTCCAAAGGAAATG
TATAAATGTAGTAATATTTTACTCCGGAGAAATGAAATTATACATCTATG
AATGTACTCTGGCAAACATATTCTGTTTGTTGTGGGCAACACCCTCTGAC
AAACATAATCTGTAACTTTTCTGTTCATTCACCAATTGGAAGGTCATTTG
AACTATTTATAGTAAAGTATTATTAACTTCCGCTTGTGAATATATCTGTA
TTTAGACTTTGGTTCGAACAATATTAATTCATTATTTTTTAAATTATTAT
ACCTGAAACCTCAATGGAAATGATTATTGTTGCTAGCTTATCCCTATTAT
TGCACCTTTTTTAGCAATACTGTGTTGTCCCCCCCCGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_l02.g1 MSMg01no236_l02.g1 CHROMAT_FILE:
MSMg01no236_l02.g1 PHD_FILE: MSMg01no236_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:19 2005
         (267 letters)



>mm_chr17_82152988_82153654
          Length = 667

 Score =  447 bits (231), Expect = e-130
 Identities = 258/267 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagaaggacaaaagagttttttaaagctaagagagccaatgtctgtgtcccataatt 60
           |||||||||||||||||||||||| |||||||||| |||||||||||||||   ||||||
Sbjct: 201 actcagaaggacaaaagagtttttaaaagctaagaaagccaatgtctgtgttaaataatt 260

                                                                       
Query: 61  aacggttcccttctctgctaccagcatgttcaaaaccatcagatttgccatttttaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacggttcccttctctgctaccagcatgttcaaaaccatcagatttgccatttttaaaag 320

                                                                       
Query: 121 gcagtaacttcaaaacgtatagtagctcaatataatatctggcaactgaaattaacatgg 180
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagcaacttcaaaacctatagtagctcaatataatatctggcaactgaaattaacatgg 380

                                                                       
Query: 181 tgaaggtaaagaatagtcccatcaacatatggatgcattatgctgcctcttttcaacccc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgaaggtaaagaatagtcccatcaacatatggatgcataatgctgcctcttttcaacccc 440

                                      
Query: 241 aaactcttcgctgttacattcacatta 267
           |||||||||||||| ||||||||||||
Sbjct: 441 aaactcttcgctgtcacattcacatta 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)