BAC Information

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BAC

Clone NameMSMg01-237G07
Chromosome17 (Build37)
Map Location 23,591,503 - 23,592,206
singlet/doubletsinglet
Overlap genenone
Upstream gene1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775
Downstream geneEG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G07.T7 (MSMg01no237_g07.b1)MSMg01-237G07.TJ (MSMg01no237_g07.g1)
ACCAG402355AG402356
length740736
length of high quality
(start - end)		674 (67 - 740)662 (75 - 736)
definitionCHROMAT_FILE: MSMg01no237_g07.b1 PHD_FILE: MSMg01no237_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:12 2005CHROMAT_FILE: MSMg01no237_g07.g1 PHD_FILE: MSMg01no237_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:13 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAGATTACGAATTGATCTGGAAGTGGGAAAACATTTGAAATGTA
AATAAAATAATTTAATTGAAATATAATGAAAATTTGAATCATAAGACAGT
GAATTGAAATAAGTTTTAGCTGCCAGTTGGATGCTGGGAAGTAAATTGTG
GTCCTCTCTAAATGTAGCCAGGTCCCTTAAGTGTCCCTCAAGATTTAGGG
TCTGAATGCTCATATCTGAGTAGGACTGTTCTGAAATTGTTTGGTCACTT
CAGTGAACTTTAGTATGAGATCATAACCTTCCCCTGTAGTCATCCTCAGT
CCATTCCACTAGTATTTCTTCACAAAAATACTCACACTAAATGAAGTCCT
ATGATATATGATTTCAACTCAATCTTTGTGAAATTGTATTTGTATTTTGA
TTCTTTTTTAATGTTCTCTTTGAGATACTAAGATAGCTTAGAATTTAACA
CTATATGTTGTTCATGGAAAACGAGGTTTGATTTCAAGCACCTATACCAT
GGCTCACACTTTAGTTCTAGAAAATGTAAATTGTGTTAGCATTTGGCAAG
ACACGTACACACAACAACACACACTAGAATTACACACATATTTCATCACA
CACACACACACACACACACACACACACACACACACATATATATATATATA
TAATTTTATGTATAATATATAGACACATATATAATTTTAC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGATGATGCTAAGTAGCCTTAGTCTC
CTTTGCTTATGTTCTTGCCCCTTTCTCTCTCCATCTTGTTATCTCTGATG
TTACCTTGTCTTGCTGTCTCTGACTGTGGATTCTCCCTCTGGTAAGCTCT
TCCCCAGTGGGATTTGTGTATGGGAAGATGTGGCACACGTTCATCTTCTG
GTGCAGATGGAAGCCAAAGGATTCTGTCCCAGGCTGCTCCTCAGTAGCTT
CTGGCTATTATAAATATGGCTGCTGTGAACACAGTGGAGCATGTGTCCTT
AATACATGTATGATCATCTTCTGGATGCACACCCAGGAGTGGGATAGCTG
GGTCCTCAGGTAGTACTATCTCCAATTTTCTGAAGAACCACCAAACTGAT
TTCCAGAGTGGTTGTACCAGATTGCCATCCCACATCTTTCTCCACATCCT
CACCAGCATCTGCTGTCAGCTTAGTTTTTGATCTTAGCCATTCTGACTGA
TGTGAGGTGGAATCTCAGGGTTGATTTGATTTGCATTCCTCTGATGACTA
AGGATGTTGAACATTTCTATAGGTGTTTCTCAGCCATTCGAGTTTCCTCA
GTATAGAATTATCTAGCTCTTTTCCCCAATTTTAAATAGGGTTATTTGTT
TCTCTGGAGTCTAACTTCTTGAATTTATTGTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g07.b1 MSMg01no237_g07.b1 CHROMAT_FILE:
MSMg01no237_g07.b1 PHD_FILE: MSMg01no237_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:12 2005
         (674 letters)



>mm_chr17_23591365_23592438
          Length = 1074

 Score =  339 bits (175), Expect = 6e-97
 Identities = 568/737 (77%), Gaps = 103/737 (13%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgatctggaagtgggaaaacatttgaaatg----taaataaaataatttaattgaaat 56
           |||||||||||||||||| |||||||| ||||    |||||||||||||||| || ||| 
Sbjct: 842 attgatctggaagtgggacaacatttgtaatgtaaataaataaaataatttattttaaa- 784

                                                                       
Query: 57  ataatgaaaatttgaatcataagacagt-gaattg---aaataagttttagctgccagtt 112
           | ||| | | |||||||||| || || | ||||||   |||||   ||||||| |||  |
Sbjct: 783 a-aattagactttgaatcatgagtca-tagaattgacaaaata---tttagctcccaaat 729

                                                                       
Query: 113 ggatgctgggaagtaaattgtggtcctctctaaatg--tagccaggtcccttaa------ 164
           ||||||| ||||||||| | |||||||| | ||| |  ||| ||| | ||||||      
Sbjct: 728 ggatgctaggaagtaaactctggtcctc-ccaaa-gaatag-cagtttccttaaatgttc 672

                                                                       
Query: 165 ---gt--g----------tccctc-aagatttagggtctgaatgctcatatctgagtag- 207
              ||  |          |||||| ||| ||||  || ||||||||| | ||| ||| | 
Sbjct: 671 tttgttagaactcacttctccctcaaag-tttactgtttgaatgctcgtctcttagt-gt 614

                                                                       
Query: 208 gactgttctgaaattgtttggtcacttcagtgaactttagtatgagatcataaccttccc 267
           |||||||||||||||||  || |||||||||||||||||||||||||||| |||||||||
Sbjct: 613 gactgttctgaaattgtggggccacttcagtgaactttagtatgagatcacaaccttccc 554

                                                                       
Query: 268 ctgtagtcat-cctcagtccattccactagtatttcttcacaaaaatactcacact-aaa 325
           ||| |||||| ||| ||||| ||||| ||||||||||||||| || |||||||||| |||
Sbjct: 553 ctg-agtcatgcct-agtcctttccagtagtatttcttcacagaagtactcacactaaaa 496

                                                                       
Query: 326 tgaagtcct--atgatatatgatttcaactcaatc-tttgtgaaattgtatttgtatttt 382
            ||| ||||  ||  ||| ||| ||||| |||| | ||||||||||||||||||||||||
Sbjct: 495 agaaatcctacat--tatgtgacttcaaatcaa-cgtttgtgaaattgtatttgtatttt 439

                                                                       
Query: 383 gattcttttttaatgttctctttgagatactaagatagcttagaatttaacactatatgt 442
           ||||||||| || ||||||||| ||||||||||||| |||||| |||||||| || ||| 
Sbjct: 438 gattcttttatactgttctcttggagatactaagatggcttagcatttaacagtacatgc 379

                                                                       
Query: 443 tgttcatggaaaacgaggtttgattt-caagcacctataccatggctcacacttt----- 496
           ||||  |        ||||||||||| || || ||||||||| ||||||||||||     
Sbjct: 378 tgttt-t--------aggtttgattttca-gctcctataccaaggctcacactttgagta 329

                                                                       
Query: 497 -----agttctagaaaatgtaaattgtgttagca-------t---t-tggcaagacacgt 540
                |||| |||||||| | |||||||| ||||       |   | |||||||| || |
Sbjct: 328 actttagttttagaaaatttgaattgtgtaagcaccaggaatgcctgtggcaagaaacat 269

                                                                       
Query: 541 acaca--caaca-acacacactagaat-tacacacatatttcatcacacacacacacaca 596
           | |||  ||| | |||||||  ||||| ||| | |||||||||||||||||||||| |||
Sbjct: 268 atacatacaa-agacacacag-agaatatac-c-catatttcatcacacacacacataca 213

                                                                       
Query: 597 cacacaca--cacacacacacacacatatatatatatatat--aattt-tatgtata-at 650
           ||||||||  |||||| || |   ||||| ||||| | |||  ||| | ||| |||| ||
Sbjct: 212 cacacacattcacacataccc---catatttatatttttatgtaatatatatatatatat 156

                            
Query: 651 atatagacacatatata 667
           ||||| ||| |||||||
Sbjct: 155 atatatacatatatata 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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