BAC Information

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BAC

Clone NameMSMg01-237L13
Chromosome17 (Build37)
Map Location 5,843,315 - 5,843,825
singlet/doubletsinglet
Overlap geneSnx9
Upstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352
Downstream geneLOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237L13.T7 (MSMg01no237_l13.b1)MSMg01-237L13.TJ (MSMg01no237_l13.g1)
ACCAG402588AG402589
length666696
length of high quality
(start - end)
511 (46 - 556)594 (76 - 669)
definitionCHROMAT_FILE: MSMg01no237_l13.b1 PHD_FILE: MSMg01no237_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:37 2005CHROMAT_FILE: MSMg01no237_l13.g1 PHD_FILE: MSMg01no237_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATTTCCAAGAGAGAGCGCGGAATTCAGGTTTTGCGAGAAGAACCAGTG
GTTACGGAGCACCACTGCTCTTCCAGAGGAACAGGATTTGGCCCCCAGAA
TCCACGTGACTACTTACGACGGTCAGTTGACTCCAGTTCCAGGGAATCCA
GATCCCTCTTCTTGGAACAAAACACCCATACACATAAAATAAATATTTTT
CAAAATAATCATGTGACTTCAGAGATAAGTGTATATTCAAGAAAATATTG
TAAGAACGACTTAGACTAAAACTGTGTATGGGAGAATTAAAGCCATTTTC
CCATAAGCGCTAAGGCAATCCCAACCCTACCAGCTGTCCACGAGATGCAT
TCATTTCCCAACACTTAGCTCTTATAGCAAAAGCCTGCGCACTACTTGGG
CTTAAACGTCATTGAGTCCATCATCAGTCCTTGCTAAGTACACCTGACCA
CCTACAGGGTTCAAGGAAGGGAAGAACTCCAACTCTTCAGCTGTGGGGAA
GGGAAGAGGTGTGTCTTTCAGGGACCAACTCAAAAATGAGCTTTGCTTTG
ACACACAAACGGAGAAAAGCGCAGAGGAGTTCCCTTTAACGAGGCTTTCC
CAACCAGCCCCTTTCTTCAGAGGGCAGCGGTTTGTCCTCTGTGCCACCTG
GGGATGCGGCCTCTTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTCTTCCACCCTTCTCCACAA
CACTAGCTAAGAGAGAAGAGGGCGATACAAAGTGAAGGAAAGAGTCCTGA
ATAAGGTCAGAGGTCAGAAAGCTGGAGATGTTATTGTTAGACAACTTCCT
GCTGATTAGGGGCATTGAGTTCCTTGGGGCAAATTTCATCTTTGCTCTCA
GGATGTCTAATTTCTTCTTGTTTCTTCTTGGCACATGACTACTTAACAAA
CTTCTACCAACAACAACCTAGATCCCAACAACAATCCACTACTCTGTGCC
CCAGAATTTGTATACCCTCTGAAAAGTCCCCAGAATTCCAAATGTCACAC
AATTGCAGAAACTATCTGCAGCTGACAAAATCACGCCCCTGCTAGAGAAC
GAGGCAAATCATAGTCAGCTGCTGCAGACAATCTAATGTAGCCCCATATC
TCACACCTGGGATTAAAATAAAAACATGTTTTTATAATATTTCTGTGTTT
TTCAAAGAAGCCAAAACCCCAAATTCCTCACAACACCAAGGTCTCTAGGA
AGGAGCACCCAGCCTGATTCTACGCTCAGAGTCACCCTGCAGGTCATAGG
CATAGTTCTCACTCACCTCATAAACTGAGATCAGACAGTCCACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_l13.b1 MSMg01no237_l13.b1 CHROMAT_FILE:
MSMg01no237_l13.b1 PHD_FILE: MSMg01no237_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:37 2005
         (511 letters)



>mm_chr17_5842998_5843908
          Length = 911

 Score =  934 bits (483), Expect = 0.0
 Identities = 504/511 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtggttacggagcaccactgctcttccagaggaacaggatttggcccccagaatccac 60
           ||||||||||||||||||||||||||| ||||||||||||||||||  || |||||||||
Sbjct: 828 cagtggttacggagcaccactgctcttgcagaggaacaggatttggttcctagaatccac 769

                                                                       
Query: 61  gtgactacttacgacggtcagttgactccagttccagggaatccagatccctcttcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gtgactacttacgacggtcagttgactccagttccagggaatccagatccctcttcttgg 709

                                                                       
Query: 121 aacaaaacacccatacacataaaataaatatttttcaaaataatcatgtgacttcagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aacaaaacacccatacacataaaataaatatttttcaaaataatcatgtgacttcagaga 649

                                                                       
Query: 181 taagtgtatattcaagaaaatattgtaagaacgacttagactaaaactgtgtatgggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 taagtgtatattcaagaaaatattgtaagaacgacttagactaaaactgtgtatgggaga 589

                                                                       
Query: 241 attaaagccattttcccataagcgctaaggcaatcccaaccctaccagctgtccacgaga 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 588 attaaagccattttcccataagcactaaggcaatcccaaccctaccagctgtccacgtga 529

                                                                       
Query: 301 tgcattcatttcccaacacttagctcttatagcaaaagcctgcgcactacttgggcttaa 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 528 tgcattcatttcccaacacttagctcttatagcaaaagcctgggcactacttgggcttaa 469

                                                                       
Query: 361 acgtcattgagtccatcatcagtccttgctaagtacacctgaccacctacagggttcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acgtcattgagtccatcatcagtccttgctaagtacacctgaccacctacagggttcaag 409

                                                                       
Query: 421 gaagggaagaactccaactcttcagctgtggggaagggaagaggtgtgtctttcagggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaagggaagaactccaactcttcagctgtggggaagggaagaggtgtgtctttcagggac 349

                                          
Query: 481 caactcaaaaatgagctttgctttgacacac 511
           |||||||||||||||||||||||||||||||
Sbjct: 348 caactcaaaaatgagctttgctttgacacac 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)