BAC Information

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BAC

Clone NameMSMg01-260E21
Chromosome17 (Build37)
Map Location 53,716,025 - 53,716,674
singlet/doubletsinglet
Overlap genePcaf
Upstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik
Downstream geneEG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E21.T7 (MSMg01no260_e21.b1)MSMg01-260E21.TJ (MSMg01no260_e21.g1)
ACCAG403006AG403007
length846749
length of high quality
(start - end)
---650 (81 - 730)
definitionCHROMAT_FILE: MSMg01no260_e21.b1 PHD_FILE: MSMg01no260_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:22 2005CHROMAT_FILE: MSMg01no260_e21.g1 PHD_FILE: MSMg01no260_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCAGTGGAGAAGGGANGNAAAGGAAGGGAATCCAAAAGGGGGGGGAAGAG
GTTGGCTTCCCCCAGAAAACGATAAGGAGAAGAAATGGGTGCTGGTGACG
GAAACATGTTAGTACCTCTAGGTTAACGTGCGGGAGCAGAGATACTATGC
ATATTTTTCCTCCTCAGATCTATCAACTAATAAACAGATAAATCAAGTGT
ACAGACAAAGCTATCGTGCGTCGAGGTACCGCCGATAAGGAAGTGATTTA
TTATACTACTTCTTATATTAAAAGAACATTAATAACTATGTGTACAAAAT
ACCAAATAGAAGAAATAATATATCACCAACATGATATTTCTTTAAAACGT
TAGCAACCGAGAGATAGACGGCATAAGACAAGAAAGAGGAGGGGGTGAAT
ATAGACTTATTAGAAGTATCCCCCCGTCGGAGAGATACAACTTTTAATAA
ACGTATATTTATCTTCACTGGACTAGGTGTATGGAGTCGGGGGGCGATTT
GTTCAATTACTAACTGTTGAACGAGAATAAGGCTATAGAACCGGCAGCTG
GGTAAATCGATGAGCGAAGAAGGCGGAAACACAAGCTTTATATATGCAAC
TAGGATATAAACGGGTAGCGGGCGAAGCATAGTGAAGATTCAGGCACTGG
CTGTGGATACGGGAGAAGCCATGATAATGCACTCTGCACCTTTGCGCTGC
CGCGAGGTGATCAGGGTGTCGGCCAACGGATCTCAGGTTGTACTTATGCG
CTCTCCGTGAATTTACAGGACTGTACGCTGATGCGGAGTAAGGTGCTAAT
GTGGCTGGGGACTATGATGGGAAAGTCTAATGCGGTAGATCGGCGG
TTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTAACCTGCATCCACTG
ACCACAGAGCTCAGCGATAAATTCTGAGCCATGAAAGCAGTTACAGTAGC
GGTGGTGGCTGGCAGAGGAGACGGTAAAAACATCCATTTCTGTCCCAGCT
GCATGTTTGCAAAAAACCTTACAGATCCACCAGAAAACACAGACAAAACT
TCACAAGAAGACAGATAAAACTTTCCAATAACAGACAGAACTTTCGGGTT
AGCCAGAACCAGGTAGGCAGATGGTCTTGCTATTCGCCCTACACGGGAGG
TTATTGGGCCTTTGAACAAAACCCTTCCATGTCTAGGATTGCGATCCCAC
AGACAGTGACTCGCTAGGAGGCCTCTATAGATGGCTTCTACCTTTCTTAG
CACGGCAGTTCATCCCCATAGTCTATGAACTGAAGCCTCAGAGCCTTGGA
ACATCTCTAGGCACATGCCTCCCAAAGTTACCTCAGAGTTCTGAAGTGAA
AGTCTGGCTTTAGAATTTGGATGTGTGGTCTGAATCTCACTGGGAGCCTC
CAGAAAGTGTTAATCGCACTGGCCCAGAATAAGACCACTACTATACTCTT
AGGCCAGATTAGAAGAAGCTTTAATTAAATACTGGCCATGTGGATGGACT
CTGGCCAGGTCCATAGCCTGGTTCCCAGGAAAATGGTCATGAGTCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e21.g1 MSMg01no260_e21.g1 CHROMAT_FILE:
MSMg01no260_e21.g1 PHD_FILE: MSMg01no260_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:22 2005
         (650 letters)



>mm_chr17_53715825_53716874
          Length = 1050

 Score = 1241 bits (642), Expect = 0.0
 Identities = 648/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctaacctgcatccactgaccacagagctcagcgataaattctgagccatgaaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctaacctgcatccactgaccacagagctcagcgataaattctgagccatgaaagcag 260

                                                                       
Query: 61  ttacagtagcggtggtggctggcagaggagacggtaaaaacatccatttctgtcccagct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttacagtagcggtggtggctggcagaggagacggtaaaaacatccatttctgtctcagct 320

                                                                       
Query: 121 gcatgtttgcaaaaaaccttacagatccaccagaaaacacagacaaaacttcacaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgtttgcaaaaaaccttacagatccaccagaaaacacagacaaaacttcacaagaag 380

                                                                       
Query: 181 acagataaaactttccaataacagacagaactttcgggttagccagaaccaggtaggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagataaaactttccaataacagacagaactttcgggttagccagaaccaggtaggcag 440

                                                                       
Query: 241 atggtcttgctattcgccctacacgggaggttattgggcctttgaacaaaacccttccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggtcttgctattcgccctacacgggaggttattgggcctttgaacaaaacccttccat 500

                                                                       
Query: 301 gtctaggattgcgatcccacagacagtgactcgctaggaggcctctatagatggcttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gtctaggattgcgatcccacagacagtgactcgctaggaggcctctatagatgacttcta 560

                                                                       
Query: 361 cctttcttagcacggcagttcatccccatagtctatgaactgaagcctcagagccttgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctttcttagcacggcagttcatccccatagtctatgaactgaagcctcagagccttgga 620

                                                                       
Query: 421 acatctctaggcacatgcctcccaaagttacctcagagttctgaagtgaaagtctggctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatctctaggcacatgcctcccaaagttacctcagagttctgaagtgaaagtctggctt 680

                                                                       
Query: 481 tagaatttggatgtgtggtctgaatctcactgggagcctccagaaagtgttaatcgcact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagaatttggatgtgtggtctgaatctcactgggagcctccagaaagtgttaatcgcact 740

                                                                       
Query: 541 ggcccagaataagaccactactatactcttaggccagattagaagaagctttaattaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcccagaataagaccactactatactcttaggccagattagaagaagctttaattaaat 800

                                                             
Query: 601 actggccatgtggatggactctggccaggtccatagcctggttcccagga 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actggccatgtggatggactctggccaggtccatagcctggttcccagga 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)