Query= MSMg01no260_j13.b1 MSMg01no260_j13.b1 CHROMAT_FILE:
MSMg01no260_j13.b1 PHD_FILE: MSMg01no260_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:44 2005
(221 letters)
>mm_chr17_30011633_30012253
Length = 621
Score = 356 bits (184), Expect = e-103
Identities = 199/204 (97%), Gaps = 2/204 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcactta-tccagtacctgccgtatgtcacacataaatgctacacacagctca 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaattcagcacttagt-gagtacctgccgtatgtcacacataaatgctacacacagctca 329
Query: 64 gatctgcttcattatatgaactctgtctttcagccgcagaaactggtggccaggtgaaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gatctgcttcattatatgaactctgtctttcagccgcagaaactggtggccaggtgaaga 269
Query: 124 aagctggtggccttgttctgtctcctcagtgggacctgggctcacatcgactgagatgtg 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 aagctggtggccttgttctgtctcctcagtgggacctgggctcacttcgactgagatgtg 209
Query: 184 atgggtgtgtgtgtgtgtgtgtgt 207
||||||||||||||| ||||||||
Sbjct: 208 atgggtgtgtgtgtgcgtgtgtgt 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space: 129744
Effective search space used: 129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no260_j13.g1 MSMg01no260_j13.g1 CHROMAT_FILE:
MSMg01no260_j13.g1 PHD_FILE: MSMg01no260_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:44 2005
(620 letters)
>mm_chr17_29911709_29912730
Length = 1022
Score = 1129 bits (584), Expect = 0.0
Identities = 612/622 (98%), Gaps = 2/622 (0%)
Strand = Plus / Plus
Query: 1 ttgcttaggcatcaccagtctctcttggtctcacactgattttgtaagctttgctcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcttaggcatcaccagtctctcttggtctcacactgattttgtaagctttgctcctcg 260
Query: 61 tgatgctgaggcagtggctagcttgccagcatccctcctgcatggtttcctgcaggaacc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgatgctgaggcagtggctagcttgccagcatccctcctgcatggtttcctgaaggaacc 320
Query: 121 agtgggctatggttcttgatgcctttagtctccctgcttcttcttgactgctgcccttcc 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agtgggctatggttcttgatgcctttagtctccctgcttcctcttgactgctgcccttcc 380
Query: 181 cgtgtccctcacactcacagaggcagcagaaagaggggcagaaagagcccttgcacccgg 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tgtgtccctcacactcacagaggcagcagaaagaggagcagaaagagcccttgcacccgg 440
Query: 241 gatagagctctctttgtgccgatttcagaatcccacacctggagcacaatcaagcaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatagagctctctttgtgccgatttcagaatcccacacctggagcacaatcaagcaggag 500
Query: 301 ggaaatctcctagctttccaattagtaggaaatgccccaaggttctgtccgccccagaga 360
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ggaaatctcctagcttgccaattagtaggaaatgccccaaggttctgtctgccccagaga 560
Query: 361 gacagggcaggcaagggacagagagttccaaaggtgggctctcagtctcaggacaca--g 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 gacagggcaggcaagggacagagagttccaaaggtgggctctcagtctcaggacacacag 620
Query: 419 tgtaggctccagatttccaagtcgtgcccatgaatgaaaaactcatttctgtgggttccc 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 tgtaggctccagatttccaagtcgtgcccatgaatgtaaaactcatttctgtgggttccc 680
Query: 479 gaagacttctggcaggaggacctgccaaggaacaaggttcccagaaaggccagagcgagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagacttctggcaggaggacctgccaaggaacaaggttcccagaaaggccagagcgagg 740
Query: 539 tccatatactacaggctgagtgagcatgctactgctgtcccaaacgtgcttccttgggtc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccatatactacaggctgagtgagcatgctactgctgtcccaaacgtgcttccttgggtc 800
Query: 599 aggagaggactggtatgagggc 620
||||||||||||| ||||||||
Sbjct: 801 aggagaggactgggatgagggc 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
