Query= MSMg01no260_m04.b1 MSMg01no260_m04.b1 CHROMAT_FILE:
MSMg01no260_m04.b1 PHD_FILE: MSMg01no260_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:57 2005
(389 letters)
>mm_chr17_47400434_47401222
Length = 789
Score = 638 bits (330), Expect = 0.0
Identities = 372/386 (96%), Gaps = 2/386 (0%)
Strand = Plus / Plus
Query: 5 gaattccatcagctaccaacagccctgcctctcttcaccactgtcaatcctgggaatggc 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcagcaatgaacagccctgcctctcttcaccactgtcaatcctgggaatggc 264
Query: 65 ggtttattgtaattttaagagct-aacctagggccccaggcatgttagacgagggctcta 123
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 265 ggtttattgtaattttaagagctgaacctagtgccccaggcatgttagacgagggctcta 324
Query: 124 ccactgagccatattctcgcccattgttgagtattgtgttgaacactgtttttggtgtca 183
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaccgagccatattctcgcccat-gttgagtattgtgttgaacactgtttttggtgtca 383
Query: 184 cagtacgagcattctgcaggatgggtgccctctcctgggtatgtgcacgctgacatctca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtacgagcattctgcaggatgggtgccctctcctgggtatgtgcacgctgacatctca 443
Query: 244 tttatgtcagtcagtgttctagctccctccccgttatcataaccttcttgccagcactac 303
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggatgtcagtcagtgttctagctccctccccgttatcataaccttcttgccagcactac 503
Query: 304 tgtagaacacaaaactcacttccatttgataggctatttccatcttcaccttattgatct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 agtagaacacaaaactcacttccatttgataggctatttccatcttcaccttatcgatct 563
Query: 364 ctccccacccgacgacttcctgtgtg 389
||||||| ||||||||||||||||
Sbjct: 564 ctccccagttgacgacttcctgtgtg 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_m04.g1 MSMg01no260_m04.g1 CHROMAT_FILE:
MSMg01no260_m04.g1 PHD_FILE: MSMg01no260_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:57 2005
(283 letters)
>mm_chr17_47540779_47541461
Length = 683
Score = 352 bits (182), Expect = e-101
Identities = 194/198 (97%)
Strand = Plus / Minus
Query: 1 tgtccccagctctaaagggttggagcatccagatgaaaggaagcacagctcatgggactc 60
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 398 tgtccccagctctaaagggttggagcatccagatggaaggaagcacagcccatgggactc 339
Query: 61 ccgacagcagcatgtgagaccctggacacagaaaccgtgggctgctgagtgcgtgcaggt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccgacagcagcatgtgaaaccctggacacagaaaccgtgggctgctgagtgcgtgcaggt 279
Query: 121 ttaagctgctgcacggtggtgactgaccctgaagtgtggagctctaacggtggtgactga 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 278 ttaagctgctgcacggtggtgactgaccctgcagtgtggagctctaacggtggtgactga 219
Query: 181 ccctgcagtgtggagctc 198
||||||||||||||||||
Sbjct: 218 ccctgcagtgtggagctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
