BAC Information

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BAC

Clone NameMSMg01-261O18
Chromosome17 (Build37)
Map Location 19,956,745 - 19,957,275
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273
Downstream geneLOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261O18.T7 (MSMg01no261_o18.b1)MSMg01-261O18.TJ (MSMg01no261_o18.g1)
ACCAG404166AG404167
length733733
length of high quality
(start - end)
660 (45 - 704)530 (72 - 601)
definitionCHROMAT_FILE: MSMg01no261_o18.b1 PHD_FILE: MSMg01no261_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:25 2005CHROMAT_FILE: MSMg01no261_o18.g1 PHD_FILE: MSMg01no261_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTGTTCCTGTACACCATTTTTTAAAAGTTTATTTGGTTCTT
TGGACTCTAACTTTGTGAGTTCTTTGTACATATTGAATATTATGTAGGAT
TCATAAAGATTTTCCTAATGTGTTGGTTGCTGTTTTGTCCTATTGACAAT
ATCCTTGGACTTACAGAAGATTTGCAATTTTGCAATGTGCCATTTTTTAG
TTCTTAATCTTAGAGCATAAGCTATTAGTGTTCTGTTCAGGGAATTTTCC
TTTGTGCCCATGTGCTCCAGGTTCATCCCCACTTTCTTTTCTATTAGTTT
CAGTGTATCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTTAGCA
ATGGATCAATTTGCATTCTTCTACATGCTAACTGCCAGTTGAGCCAGCAC
CATTTGTTGAAAATGCTCTCTTTTTTCCACTGAATGATTTTAGCTCCTTT
GTCCAACATCAAGTGACCAGGTATTTGGGTTCCTTCCTGGATTTTCAATT
CTATTCCATTGATCTACCTGCCCGTCACTGTACTAATACTATGCAGTTTT
TCCTCACACAATTGCTCTGTAGTACAACTTCTGGTCAGGGATGGTGATTC
CACCTGTAGTTATTTTATTGTTAAGAATAGTTTTCAGTATTCTAGGTGTT
TTGTTATTCCAGATGAATTTGCAAATTGCTCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAGAAATTAACTTTTCTGGGTGTTTGGAAGATCATTTA
CTACTTGCTAAAATATTTATCAGAGGGTTAGTATCTGAAACTTCAAATAC
ATTCTCTCTCTCTTCTCATCAAAATTTTAATGTTTCAGACATGGAGTGAG
TATCTCTATTCTGATTTGAATTTTTCTGTGCACTGGTTGAGAGATACACC
AATAATTTCATATTGCAGGCAGATGAACAGTTTTTTTCTTCAGTGATTCT
TTGTTATAGAGTTTTGTTTCTATGGTAAGTTTTTGATTTCTTCAAAAAAA
AGTGTAAACTTTAGCTGTTCATTTCAGTTCTGAGACAGGGTCTCTGACTA
TAACTCTCACTAATTAGTACTTCTCTTGTGTCCACAGGAAAAATTTCTAG
GATTGTGAAACTTTTGATTTGGGGAAGAGGAATAGACTCACAAAAGTATA
GAAATCTATCTCATAAGTATGCATCAAAGTGGGCTTGGAGCAGGAGCAAG
TGTTTCTACTAAGCTAGTATATCTTTAGTAAGTTTTGTCTGGAAAGGGGT
ATTCAAGGAGGCATAATACTCCATTTGGAACTCTGAGGTACATGGATCCT
TCAGAAGACCTAATCCAGATAAATAAGATATACTATTCGAGAAGTATTTA
AGAGAAGAGAGACTACACCTCCCAGAACAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_o18.g1 MSMg01no261_o18.g1 CHROMAT_FILE:
MSMg01no261_o18.g1 PHD_FILE: MSMg01no261_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:25 2005
         (530 letters)



>mm_chr17_19956545_19957475
          Length = 931

 Score =  919 bits (475), Expect = 0.0
 Identities = 517/531 (97%), Gaps = 1/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttctgggtgtttggaagatcatttactacttgctaaaatatttatcagagggttag 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 731 acttttctgggtgtttggaagatcattcactacttgctaaaatatttatcagagggttag 672

                                                                       
Query: 61  tatctgaaacttcaaatacattctctctctcttctcatcaaaattttaatgtttcagaca 120
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 671 tatctgaaacttcaaatacattctctctcttttctcatcgaaattttaatgtttcagaca 612

                                                                       
Query: 121 tggagtgagtatctctattctgatttgaatttttctgtgcactggttgagagatacacca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tggagtgagtatctctatcctgatttgaatttttctgtgcactggttgagagatacacca 552

                                                                       
Query: 181 ataatttcatattgcaggcagatgaacagtttttttcttcagtgattctttgttatagag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 551 ataatttcatattgcaggcagatgaacagttttttacttcagtgattctttgttatagag 492

                                                                       
Query: 241 ttttgtttctatggtaagtttttgatttcttc-aaaaaaaagtgtaaactttagctgttc 299
           ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 491 ttttgtcactatggtaagtttttgatttcttcaaaaaaaaagtgtaaactttagctgttc 432

                                                                       
Query: 300 atttcagttctgagacagggtctctgactataactctcactaattagtacttctcttgtg 359
           ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 431 atttcagttttgagacagggtctctgactataactttcactaattagtacttcttttgtg 372

                                                                       
Query: 360 tccacaggaaaaatttctaggattgtgaaacttttgatttggggaagaggaatagactca 419
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 371 tccacaggaaaaatttctatgattgtgaaacttttgatttggggaagaggaacagactca 312

                                                                       
Query: 420 caaaagtatagaaatctatctcataagtatgcatcaaagtgggcttggagcaggagcaag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caaaagtatagaaatctatctcataagtatgcatcaaagtgggcttggagcaggagcaag 252

                                                              
Query: 480 tgtttctactaagctagtatatctttagtaagttttgtctggaaaggggta 530
           ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 251 tgtttctactaagctagtatatctttagtaagtcttgtctggaaaggggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space:   478920
Effective search space used:   478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)