BAC Information

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BAC

Clone NameMSMg01-262E08
Chromosome17 (Build37)
Map Location 23,569,655 - 23,569,800
singlet/doubletsinglet
Overlap genenone
Upstream gene1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697
Downstream geneEG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262E08.T7 (MSMg01no262_e08.b1)MSMg01-262E08.TJ (MSMg01no262_e08.g1)
ACCAG404420AG404421
length803744
length of high quality
(start - end)		361 (42 - 402)661 (74 - 734)
definitionCHROMAT_FILE: MSMg01no262_e08.b1 PHD_FILE: MSMg01no262_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:52 2005CHROMAT_FILE: MSMg01no262_e08.g1 PHD_FILE: MSMg01no262_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACATTATGCTCCAAAGGCAGCAACATGAGAAGATTGGCATGTGAGGAT
GAGGGTTTCTCTTCTACCCTAGGAGGAGCTTAATCATAAGACATCAAAGC
CCATCCCCATAGTAACATACTTCCTCCAACAAGGCCACACTTACACCAAC
AAAACCACACTTCATAATAGGAACACTTGCCATGGGCCAAGCATGTTCAA
ACCACCCAAGTAGCCCTATTTGTTAACTAGTGTACCGTTATTCGAAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGAAAGA
TTGATGTCCCCCCCCCCCTGTGTCAAAAAAAGATACAATTACCCAATTCT
TGCCTTTACCAACCCCCCCATTTTACCCCTTGATCATCCTCCCATTCCAA
CCATAACCCCCGAATTTCAATTCTACTTATTGATCCCCCGTCTCCTTACA
CCAAATTTCTCCACCTTACTTCCTTCACACACTTTACCCTTTTTCGATCC
AACCCCATTCATACCCTTCTTCACTAGAAACGATCGCCTACGTGTGTATT
TAAATCCCCCACACCTCGTACTTTACCCTGCTTCTCCCCTTATAATTTTC
CCTTCCCCTCCTTCTCATCTCCGTCCCCAAAATCTCACTTTAACCCCCCC
CCGTCTAGCACGTCTCTTATCACCGTACTCAAACCCCCTCCTCATGCCCT
AAN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGCCAGCCTGGTCTACAGAGTGAGTTCC
AAGAAAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAA
AACCAAAACCAACCAAACAAAAAGAAACATTCCTCAATGAAAAAGACTCA
TACTGCCTCAGAAAAAATGGTTGGAAAAATGTCTTCCAAATAACAAGAAG
GAATTGTAATCCTAATGTACAATAAAACAGGCTTTCAACCCAAATTTATC
AAGCAAGATGGAAAAAGCCTAAGAAACATTGAGGAATCAATGTTTTTTTT
TGTTTCAAACATTACAGATAATTTTTTTGAAATATGTTTTTAATTCTTAT
ATGATATTTTCAAAGCAGACTTAAATTCTGCCTTCCATTTCCTGTATCCA
TGATGCTTTGCAGAAACTTTATGTTATCCTTGATTTTTAAACATTTTTAG
AATACTATCAGTTTTTGTTTTCTTTGTTTTTTTCTATTTGCATTTTATGG
TCATGAACATTTTCATTCATTTTTTTTTCAATTCTTTGTATTTTTTGGTT
TTCTTTAAGGTATTTATTGATTTCTTTGTTCTTTTGTGTGACACTTATTT
CTATTTCTATGATAGTGTATTTATTACTCTTTTTCTCCTTTGGGAATCTT
TTATCTCCATAAAATGCTTGTAAGTTCTTTATTTATTCTTTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_e08.g1 MSMg01no262_e08.g1 CHROMAT_FILE:
MSMg01no262_e08.g1 PHD_FILE: MSMg01no262_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:53 2005
         (661 letters)



>mm_chr17_23568942_23570002
          Length = 1061

 Score =  230 bits (119), Expect = 2e-64
 Identities = 140/147 (95%), Gaps = 2/147 (1%)
 Strand = Plus / Plus

                                                                       
Query: 514 tgtattttttggttttctttaaggtatttattgatttctttgttcttttgtgtgacact- 572
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 714 tgtattttttagttttctttaaggtatttattgatttctttgttctttcgtgtgacactc 773

                                                                       
Query: 573 tatttctatttctatgatagtgtatttattactctttttctcctttgggaatcttttatc 632
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 t-tttctatttctttgatagtgtatttattactctttttctcctttgggaatcttttatc 832

                                      
Query: 633 tccataaaatgcttgtaagttctttat 659
           ||| ||||||||||||||| |||||||
Sbjct: 833 tccctaaaatgcttgtaaggtctttat 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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