Query= MSMg01no263_j01.b1 MSMg01no263_j01.b1 CHROMAT_FILE:
MSMg01no263_j01.b1 PHD_FILE: MSMg01no263_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:31 2005
(316 letters)
>mm_chr17_42739935_42740650
Length = 716
Score = 569 bits (294), Expect = e-166
Identities = 309/314 (98%), Gaps = 2/314 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaccagaaggtgttttcttccacctgggctttcattggtaaatctgggtcatgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 336 ggaattcaccagaaggtgttttcttccacctgggctttcattggtaaatctgggtcacgt 277
Query: 64 ttactgtctataacacactttcttccaatacatccctaaaaattttgtcttcttccctta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttactgtctataacacactttcttccaatacatccctaaaaattttgtcttcttccctta 217
Query: 124 ctcagatgcattcttta-tttttattattttatttttatttttatggtttattatttact 182
||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 216 ctcagatgcattctttattttttattatttta-ttttatttttatcgtttattttttact 158
Query: 183 tattcacttctcaatctctcactgactccctcccagtcaccccctcccacaagccttccc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tattcacttctcaatctctcactgactccctcccagtcaccccctcccacaagccttccc 98
Query: 243 ccattcctttcccccttctcctctgtgtgggtgggggcccctgggtatcctcctaccctg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 ccattcctttcccccttctcctctgtgtgggtgggggcccctgggtatcctcctaccctg 38
Query: 303 gtatcaagtcttcc 316
||||||||||||||
Sbjct: 37 gtatcaagtcttcc 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_j01.g1 MSMg01no263_j01.g1 CHROMAT_FILE:
MSMg01no263_j01.g1 PHD_FILE: MSMg01no263_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:31 2005
(288 letters)
>mm_chr17_42586770_42587457
Length = 688
Score = 507 bits (262), Expect = e-148
Identities = 281/288 (97%), Gaps = 2/288 (0%)
Strand = Plus / Plus
Query: 1 tctaactatgtagataataaataaaaagcaatgatattagtaataatcacgcctaaggtc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 203 tctaactatgtagataataaataaaaagcaatgaaattagtaataatcacgtttaaggta 262
Query: 61 agacattgtgtgagtgtacatgtatatttctgtatatacatacacatatatatatgcaca 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 agacattgtgtgagtgtacatgtatatttctgtatatacatacac--atatatatgcaca 320
Query: 121 tacatacatacagcatatatatttatgctataataccctatggaaaattctttagagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatacatacagcatatatatttatgctataataccctatggaaaattctttagagtta 380
Query: 181 catctacaatattgaggtcagaacgtctttcaagtgccctttgaaaacaagggtgaggag 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctgcaatattgaggtcagaacgtctttcaagtgccctttgaaaacaagggtgaggag 440
Query: 241 agctccagcacttttgtagacagtggtattttatgttcattaggcttg 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctccagcacttttgtagacagtggtattttatgttcattaggcttg 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
