BAC Information

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BAC

Clone NameMSMg01-263M22
Chromosome17 (Build37)
Map Location 76,539,269 - 76,539,403
singlet/doubletsinglet
Overlap genenone
Upstream geneLtbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneLOC100043886, EG624348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263M22.T7 (MSMg01no263_m22.b1)MSMg01-263M22.TJ (MSMg01no263_m22.g1)
ACCAG405528AG405529
length847761
length of high quality
(start - end)
142 (42 - 183)297 (76 - 372)
definitionCHROMAT_FILE: MSMg01no263_m22.b1 PHD_FILE: MSMg01no263_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:50 2005CHROMAT_FILE: MSMg01no263_m22.g1 PHD_FILE: MSMg01no263_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATGCTTTGTATCCAGACTAACAAGCATTCCACTAATTTTCTATAAAAT
ACTTCCTAGTGCATCCTGTCACTCCAGTATAATGGTGAAAATAGGCAAAA
AGAAGGGAGGGAGGGAGGGAGGAAGGAAGCAAGNNNNNNNNCNNCCTTNN
NNNNNTNNNNTTTTTTTTTTTTTTCTTTTTTTTTCTTTCCTTTTTCTTTT
TCCTTCCTCCCCTTCCTCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTTCCCTCCCTCCACCTTTTTTTTTTCTTCCTTCCCCACCCCCCCCCTCT
TCTTTCTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCTCATTCCTCCTTCT
CTTTCCTCCCTCCCCCCCCCCTCTCCAAATCCCATTCCCTTTCCCTCCTC
TCTCCCTCCTTCTTTCCCCCCCTCCCCCCCTTTCCCCCTTCCTCTCTTCC
CCCCCCCCCTTCCCCTCCTTTTTCCCCCTTTCTCCCCCTTCTCCTTTTTT
TCCTTTCCTTCCTCCCCTCCTCTCCCTTCTTCCTTTCTACCTCCCTCTCT
CTTCTCTCCCCCCTTCCTCTCCTTCCCTTTCCCTCTCTCTTTCCTTTCTT
TATCCTTCTTTTCTCCTTCCTCTTCTTTTCTCATTCTCCCCTTTTCCTTC
TCCATCTTTCCTTTCTCCTTCTTCTTCCCTTCTCTCTCTCCCTCCCTCTC
CTTTCTTTTCTTTCCCCCTCCCTTCCCCCTCTCCTCTCTCTCCCTTCCAC
TCATATATACCTTCCTCCCCTTCTCCCTCCCTCTCTCTCTTCCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACACCCCACTATCATCAACGGACA
AATTATGGAAATAGAAACTAAACAGAGGCACAGTGGAACTAATAGAAGTT
ATGAACCAAATGGATCTAAGAGATATTTATAGAACATTTGATTCTAAAGC
AAAAGAACATACCTTCTTCTCAGCACCTCAAGGTGCCTTCTCCAAAATTG
ACTACATAATTGGTAACAAAACAGGCCTCAACAGATACAAGAAAATTGAA
ATAATCACAAAAAATTGAAATAATTACCCTATGAGATCACCATGGACTAA
GGCTGGTCTTAAAGACCAACTTAAACAACGGAAAGCACACATACACATGG
AAGCTGAACAATGCTCTACTCCCCGACAACTAGGTCAAGAAAGAAATAAA
GAAAGAAATTAAAGGCTGTTTAGAATTTAATGAAAATGAAGACACATCAA
ACCAAAACTTATGGGACATAATGAAAGAAGTGGTAAAAGGAAAACTCATA
GCTCTAAGTGCCTGAAAGCTCTAGAACAAGAAGAAGCAAATACACCCAAG
AGGAGTAGCTGGTAAGAAATAGTCAAACTCAGCGCTGAAAGCACCCAAAC
AGAAACAAAAAAAACTAGGAGCTGGTTCTTTGAGAAAATCCAGAAGATAG
ATAAACCCTTAGTCAGACTAACCAGAGGGCACAGAGTCAGTATCTAAATT
AATAAAATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_m22.b1 MSMg01no263_m22.b1 CHROMAT_FILE:
MSMg01no263_m22.b1 PHD_FILE: MSMg01no263_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:50 2005
         (142 letters)



>mm_chr17_76539092_76539633
          Length = 542

 Score =  238 bits (123), Expect = 1e-67
 Identities = 132/135 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatgctttgtatccagactaacaagcattccactaattttctataaaatactt 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggaattccatgctttgaacccagactaacaagcattccactaattttctataaaatactt 253

                                                                       
Query: 64  cctagtgcatcctgtcactccagtataatggtgaaaataggcaaaaagaagggagggagg 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cctagtgcatcctgtcacttcagtataatggtgaaaataggcaaaaagaagggagggagg 193

                          
Query: 124 gagggaggaaggaag 138
           |||||||||||||||
Sbjct: 192 gagggaggaaggaag 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)