BAC Information

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BAC

Clone NameMSMg01-264E18
Chromosome17 (Build37)
Map Location 56,460,767 - 56,611,368
singlet/doubletdoublet
Overlap geneUhrf1, Jmjd2b, Ptprs
Upstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5
Downstream geneEG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264E18.T7 (MSMg01no264_e18.b1)MSMg01-264E18.TJ (MSMg01no264_e18.g1)
ACCAG405883AG405884
length712759
length of high quality
(start - end)		238 (55 - 292)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no264_e18.b1 PHD_FILE: MSMg01no264_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:26 2005CHROMAT_FILE: MSMg01no264_e18.g1 PHD_FILE: MSMg01no264_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,611,131 - 56,611,368)(56,460,767 - 56,461,053)
sequence
CAACTACTAAATGCCGTATCTGCGCGGAATTCTCCAGTGTTCCCAAAAAC
AGCCGATCTGAGGAAAGGGTCTGGGAGGGATGGCCCAGAGAGGGAGAGCC
CGTCCCTGAGGCTACACCGCGCAGTGTGGAGTCAGCTGGCCCAGTGCAGT
AGAGGAGGCTTGGAACCTACCAGTAGTTAAAAGGGGGAAACTGAGTCAGG
AAGCCACAGAAAGAGCAGCTTCTCAGTGTTCGATGTCATTCCAGTACCCA
GGAGGTTGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTGGTCNACTCG
GTTGGGGGGGTGCTGCAGNTGAGGCTAGCCTGATTTTTTTTTTTTCTCCC
CCACCCCCCCCCAATTTGTGTTATATGTNANNNNCCCCATTGGCTTGAAA
TTGAAAATAAAAATCCAGTCCCCTGGGCTCTAGCTTCCAGAGGACCTAAT
GGAGCGAACAAAAACTCTGAAGTCTGGAGGTGGCCCCCCTCCTCAGCACG
GTCCTCCACAAGCCAGGACACATCTACTCAGGAGTCATGCCTGTCCCTAA
GTTTCCCCAGCTGTCAGTGTGTTGTGTCTACATTATCCCAGGGATCCTTC
AATGACTGGGGGAAAGCCGTTGTTTTTTTTTTGTTTGAGCCCGACCCTGT
GCTATCGTGTCCATCACGTCCGGCGAGCGCTTGGCGCTGGCCATTGCCCC
TGACAGAAATGG

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACATCTTCAGAAGGCAGCTAGGA
GAGTGTTTGGCTTCTAAGCAGCTAGGATGAGGGTCTTCAAGCCCATGCCT
ACACACTGACACACCTACTCCAAAAAGGCTATACTTCCTAATAGTGCCAC
TCCCAGGGCCAAGCATATTCAAACCACCACCCAAGGGCTGCTGCACCTAT
TTCCCGCTGTGCCTTTGTGGCTCTGGAAGTGTCCCTTTGCCCTTGCTGTG
CTTGACTTAAAGTTTGTGTGCTTGATTTAGTGTGTCCCCGGAGTGAGAGT
CCTGTATCTTGTATCGTTTANTTACCTGNGCTAATCCAGACCTGTATCTG
CCTTTAGTAAGGCTGTGACNTGAGACCCTGAAAAAAAAAATGCTGCCCTG
GGGATGCCAGTTTCTGGGGCTCATTCAGGGTCAAACTGAATAAAGCCTCT
ACTTGTTACAGACTGAGTCTGGATGATCAGTTCAGACTCTGTATGTGTCT
CAGTGCTGAAATCAGAGGTCTGGACTTAGAGGGACTTGAAAAGGTTCAGC
CCCTTCCTGCCATTTTCAGTGTCAGAAGCCTTGTCTCTGTGTCATACACT
GCAGTGTCCTCAGTCTTTGCTGAGTGTCAAATGAGTGTGGCAGAACCTTG
TCTTGTGATTGTGTAGAGAGTGATGGAAGAAACCCCTCTCACTTGCCTTG
AAATACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_e18.b1 MSMg01no264_e18.b1 CHROMAT_FILE:
MSMg01no264_e18.b1 PHD_FILE: MSMg01no264_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:26 2005
         (238 letters)



>mm_chr17_56610990_56611627
          Length = 638

 Score =  414 bits (214), Expect = e-120
 Identities = 232/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatctgaggaaagggtctgggagggatggcccagagagggagagcccgtccctgaggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 379 gatctgaggaaagggtctgggagggatggcccagagagggagaggatgtccctgaggcta 320

                                                                       
Query: 61  caccgcgcagtgtggagtcagctggcccagtgcagtagaggaggcttggaacctaccagt 120
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caccaagcagtgtggagtcagctggcccagtgcagtagaggaggcttggaacctaccagt 260

                                                                       
Query: 121 agttaaaagggggaaactgagtcaggaagccacagaaagagcagcttctcagtgttcgat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 259 agttaaaagggggaaactgagtcaggaagccacagaaagagcagcttctcagtggtcgat 200

                                                                     
Query: 181 gtcattccagtacccaggaggttgaggcaggaggatcaggagttcaaggtcatcctgg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gtcattccagtacccaggaggttgaggcaggaggatcaggagttcaaggtcatcctgg 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no264_e18.g1 MSMg01no264_e18.g1 CHROMAT_FILE:
MSMg01no264_e18.g1 PHD_FILE: MSMg01no264_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:26 2005
         (287 letters)



>mm_chr17_56460567_56461253
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatcttcagaaggcagctaggagagtgtttggcttctaagcagctaggatgagggtct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tacatcttcagaaggcagctaggagagtgtttggcttctaggcagctaggatgagggtct 260

                                                                       
Query: 61  tcaagcccatgcctacacactgacacacctactccaaaaaggctatacttcctaatagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagcccatgcctacacactgacacacctactccaaaaaggctatacttcctaatagtg 320

                                                                       
Query: 121 ccactcccagggccaagcatattcaaaccaccacccaagggctgctgcacctatttcccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactcccagggccaagcatattcaaaccaccacccaagggctgctgcacctatttcccg 380

                                                                       
Query: 181 ctgtgcctttgtggctctggaagtgtccctttgcccttgctgtgcttgacttaaagtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgcctttgtggctctggaagtgtccctttgcccttgctgtgcttgacttaaagtttg 440

                                                          
Query: 241 tgtgcttgatttagtgtgtccccggagtgagagtcctgtatcttgta 287
           ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tgtgcttgacttagtgtgtccccagagtgagagtcctgtatcttgta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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