BAC Information

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BAC

Clone NameMSMg01-264G08
Chromosome17 (Build37)
Map Location 3,943,944 - 4,112,667
singlet/doubletdoublet
Overlap gene4930470H14Rik
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream genePpia-ps17_26.1, Arid1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264G08.T7 (MSMg01no264_g08.b1)MSMg01-264G08.TJ (MSMg01no264_g08.g1)
ACCAG405954AG405955
length729857
length of high quality
(start - end)		310 (46 - 355)286 (127 - 412)
definitionCHROMAT_FILE: MSMg01no264_g08.b1 PHD_FILE: MSMg01no264_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:33 2005CHROMAT_FILE: MSMg01no264_g08.g1 PHD_FILE: MSMg01no264_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,112,362 - 4,112,667)(3,943,944 - 3,944,222)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGAAGACAGAGCAGGTGGACTCTGTGGGTCAGAGAAACCTTCT
CTGAATATCTGTAGGGGACCGGGTTGCTGTTTCAGTGTTAGGCTGAGAGT
TTGAGGGCTGGCAATTGTCACCACCACTATAGGCCTATAGACCAGCAGCC
ACCATTAGGAGGTTATGGAGGGTGGATTTATGCTATCTCTGCAGGGTGAA
AAAAAAAATCTTACCTGCCCTATATAATTTATTTCTATCAAACTACATGT
CCAAGTATTTATTATTATTTCTTACTTAATAGATGGAGTCATTGAGATTC
AGAGAGATTCTCATTCTGACCCCAGCCTTCCCAAGCTGCTGAGCCTATAT
TTAAGCTCCGGTCTAAGTGAAGCACTAAATCAGACTCTTCATCACTGCCT
TGGGCATGACAGTGCAGTTATCTTGAATACTGGAATTTAATTGAAGATTT
CTTTGTGGGATAAACACATGATAAATTACAATATTTGAAACCTGATGAAG
CATCCATTACCCGGCTTTAAATGAGCCTCTCAGGACGTGTGTTCCATCTT
GTTTTGTAGCAAGCTCCCAGACACCGAGTTCAAAGGGGTTCTCCTTATCA
ACAACACTCCATCATGACTGGATGCTCAGGTTTCCCATGGCCAGAACAGA
GGGTTATAATAGACTTTAAGAGAATGCTG

TTTCTTTTTTTTTTTTTTTTTTNNTATTAACCACCTTATTTTTNNNTTCT
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGATTTGCCTGTATCCTTTTCA
GTCTGCAACTTGCTGGATGCGCATGAATATGAGCCATTTGTTCTTCTTCC
CTTGAAGCAGTATTTCAATAGACAGTTCCTTCACCTTCACCTTCACCTAT
ATTGTGGGTGTCTAAGGATACTTTTAGTGTAATTATTTAATCTTCATTTA
TCTTGTTAGGCAAGGGTGGGGCATGTGTGTGTGTGTGTGTGTTGCTGTCA
AGGTCCCTAATTTTAAGTAAGATGTTTCTGCTTACCTTCTGGTCTTTTCT
ACTGGATAGAGTATATTATGATTATCTCGGAACANACCCATATGTTGTTA
TGTAGAGAAAATATGGGGTTATTGCCAAAAAAAAAGAAAAGAACTCTAAG
GCGTCCTGTATTCAACAACATTCAGATGGACTGTGGTTCATTGTCAGTTT
ACACCAATGGACCGGTTTGGAGTATGGAAAATTTTGACATCAACCCCCTT
GTCCCTAATGTAAATGCCACACCTTCCCTTAACAAAATTTAAGTTCTAGT
TCACAATGCATCATTATGAGAAATTCAAATACTGTAGACATGTAGCCTAC
TAGATTCTACTCTAAAATAACATTAATGATCGCTTTGCATTAGTGCTTAT
AACTCTCACATTAATATTTGGTTTAATTCAATGTTTTTTTATAACTTATT
TACCTCTTGCCCCTGCAAATATTCCTTTGATTAAAAAACTCGCATAAATA
CAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_g08.b1 MSMg01no264_g08.b1 CHROMAT_FILE:
MSMg01no264_g08.b1 PHD_FILE: MSMg01no264_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:33 2005
         (310 letters)



>mm_chr17_4112158_4112867
          Length = 710

 Score =  516 bits (267), Expect = e-151
 Identities = 297/309 (96%), Gaps = 6/309 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagaagacagagcaggtggactctgtgggtcagagaaaccttctctg-aatat 63
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 510 gaattcacagaagacagagcaggtggactctatgggtcagagaaaccttctctgaaatat 451

                                                                       
Query: 64  ctgtaggggaccgggttgctgtttcagtgttaggctgagagtttgagggctggcaattgt 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgtaggggactgggttgctgtttcagtgttaggctgagagtttgagggctggcaattgt 391

                                                                       
Query: 124 caccaccactataggcctatagaccagcagccaccattaggaggttatggagggtggatt 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 caccaccactataggcctatagaccagcagccaccattaggaggctatggagggtggatt 331

                                                                       
Query: 184 tatgctatctctgcagggtgaaaaaaaaaatcttacctgccctatataatttatttctat 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tattctatctctgcagggtgaaaaaaaaaatcttacctgccctatataatttatttctat 271

                                                                       
Query: 244 caaactacatgtccaagtatttattattattt--cttacttaatagatggagtcattgag 301
           |||||||||||||||||||| ||||||||     | ||||||||||||||||||||||||
Sbjct: 270 caaactacatgtccaagtatgtattatta---gccatacttaatagatggagtcattgag 214

                    
Query: 302 attcagaga 310
           |||||||||
Sbjct: 213 attcagaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no264_g08.g1 MSMg01no264_g08.g1 CHROMAT_FILE:
MSMg01no264_g08.g1 PHD_FILE: MSMg01no264_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:34 2005
         (286 letters)



>mm_chr17_3943744_3944422
          Length = 679

 Score =  495 bits (256), Expect = e-144
 Identities = 276/288 (95%), Gaps = 11/288 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgatttgcctgtatccttttcagtctgcaacttgctggatgcgcatgaatatgagcca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catgatttgcctgtatccttttcagtctgcaacttgctggatgcgcgtgaatatgagcca 260

                                                                       
Query: 61  tttgttcttcttcccttgaagcagtatttcaatagacagttccttcaccttcaccttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgttcttcttcccttgaagcagtatttcaatagacagttccttcaccttcaccttcac 320

                                                                       
Query: 121 ctatattgtgggtgtctaaggatacttttagtgtaattatttaatcttcatttatcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatattgtgggtgtctaaggatacttttagtgtaattatttaatcttcatttatcttgt 380

                                                                       
Query: 181 taggcaagggtggggcatgtgtgtgtgtgtgtgtgttgctgtcaaggtccctaattttaa 240
           ||||||||||||||||||||||||||||||      ||||||||||||||||||||||||
Sbjct: 381 taggcaagggtggggcatgtgtgtgtgtgt------tgctgtcaaggtccctaattttaa 434

                                                           
Query: 241 gtaagatgtttc--tgcttaccttctggtcttttctactggatagagt 286
           ||||||||   |  ||||||||||||||||||||||||||||||||||
Sbjct: 435 gtaagatg---cactgcttaccttctggtcttttctactggatagagt 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 679
Length adjustment: 9
Effective length of query: 277
Effective length of database: 670
Effective search space:   185590
Effective search space used:   185590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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