BAC Information

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BAC

Clone NameMSMg01-264I01
Chromosome17 (Build37)
Map Location 26,996,091 - 26,996,367
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5
Downstream geneKifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264I01.T7 (MSMg01no264_i01.b1)MSMg01-264I01.TJ (MSMg01no264_i01.g1)
ACCAG406032AG406033
length7241,380
length of high quality
(start - end)
277 (375 - 651)---
definitionCHROMAT_FILE: MSMg01no264_i01.b1 PHD_FILE: MSMg01no264_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:42 2005CHROMAT_FILE: MSMg01no264_i01.g1 PHD_FILE: MSMg01no264_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATATGTTTACCAAGATGGCCTTGACCTCAGAGTTCTATCTACCTA
TGCCTCCCAAGTGCTGTGATCCCAGGCAAGTACCGCCATCACACAGCCAA
GATTCCTATTATGTTAAAATTATATATGTCATGAATATATTCACTCCTGC
CTCTCTGTGTGACCCTAACTGGTCCAGAACTAAGTAGACCAGACTGGTCT
CAAACTCACTCACAGAAATCCACCTGCCTCTGCCCCCAATGAAAGCATGT
GTCACCATGCCCAGCTANGTTTATGCTCTTAAAATTTACTTACTCATTTA
TTTTATGTGTATTGCTGCTCTCGCCTCCATGTATGCCTAAGTGAGGATAT
CGGATTCTCTAGAACCGGACTTACAGACCGTTCTGAGCTGCTGTGTGGGT
GCTGGGAGTTAACCCCTGTGGAGGAGCAGCCAGTGCTTGTAACCACTGAG
CCATCTCTACAGCTCCATTTTCACTGATTGTTTCTTATTTTTCCTCTGAT
TTTAAATTTATTTTATCTTTAACAAGATTTGTTTATGTTTATTTTATATG
TATTGGTGTGTTGACTGAATGCATATCTGCGTGAGGGTGTTGAATCCCCT
GTAACTGGGGTTACTGACAGCTGTGAGCAGCCATGTGGCTGGTGGGAGTT
GAACTCAGGACCTCTGGAAGAGCA
TTTTTTTATAGTGGTTTTCTTTTCTTTCTTCGCGTTTGGGGTGTGTGGGG
GTTGCGTGTGGTGTTCTTATTTGGTCTACTCCCCACNNNNNNNNNNNNTT
GTGGGTAGGTTGCTCTGGTGGTTGGGTGGCGTTTTTGGGNTGGTTTTGTG
TTTCTCCCTTGTGTGTGGTGTGGTGGTGTCGGGGTCTTCTCTTTTCTCGT
CCTTCTTGTTTTGTGTTTGGTGCCTGGTTTTGTTTTATTTCCCGCAATGT
TATAGTGGGGTTTAAGGCCCGGGGCGGGGGGCCCGCCCTGGGCTCCGTCC
CACACTTTTTTTGGGGGGGGCGCCCTTATTTGTAAGAGGTGGGTCCTCGG
CGGGGGATATTTCTTGGGTGAAGTGGGCTCTATGAGGGCTTGGGGCGCCC
GGCGCTCAACACAACGTGTGGGGTTAACACTCCCGGGTTGTGACTTCACT
CCTGGGTGGTGTGTTGTTTTTCTGGGGGGGCGCAAACAAAAAAAATATAT
GGATTGTTTTCTCCCAGAGCGCCCTCCCCAATTTATTTTTTTTTTTTCTA
TGTTGTATTGAAATAAGAGTCTGGTAACGCCCCCCCCCCCCCCCGTGGGG
GGGCGGTGACTCTCCCGTTGTTTAATTAAATACTCATGCGAGGGNCCCTC
TCTTTGCGCTTTTTGTACACCTCTCCCCCCTACTCCTTCACNTTTCTCTT
CCTCCCCCTCCCGTGTCGCCTATAGTTGTCGCTTGTTTTTCGTCGTGCTG
CGCGTTGTTATTTCCTTTCTTCTCCCTCGCTCTTTGCCTGCTCGAGGCGC
GTTGCCGTCGTGTCGGACGGTGCCTCCTCTTATGTTGGCTGGCCGGCTTT
TATCTGTGTGTGGGTAGGTGTGTGTGTCTGTTGTCTCTTCCTCTCTGACG
TTATTTAGAGTTAGTTTGCGTAGTACTGTGCCTTTTGTTCCTCTCTTGTG
TTGATTGCGTTCGAGTCGTGCGCACCCTCACTCCTAGCCACGCTCCGCTT
CTCTTTGCTTTCGGTGGGACTGTGCTGAGGTGGTAGGAGTGGTGGGGGGT
GTGAGTGGCGCTTGCTTCCTTCCATGGTTGTGTGCGTTCTCTTTCTCGTC
TGGTATCGCCTCTGCGGTGTCTACGTTTCTTTACGTTTTTTGTGCTCGTC
GCTCGTTGACTTTGTTTCTTGTATGTTGTTTTCTTGTTTGTGGTCTCTGG
GCTCGTGTGTACTGTGTGACAATGAGTTGTTAGTTCTATATGGCNCCGTG
CGCGGTCGCGTCGGCGCTGGGCGTGGTATGCGGTTGTATTTTGATTGTCC
TGCCTCCGCGGCCGGCCAACAACGTATGCCTGGTGTGCTGTCGTGTGTGC
TCTCGTGTTGCGTGCTGTGTGCGCGCGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_i01.b1 MSMg01no264_i01.b1 CHROMAT_FILE:
MSMg01no264_i01.b1 PHD_FILE: MSMg01no264_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:42 2005
         (277 letters)



>mm_chr17_26995891_26996567
          Length = 677

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccatgtatgcctaagtgaggatatcggattctctagaaccggacttacagaccgttct 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ctccatgtatgcctaagtgaggatataggattctctagaaccggacttacagaccgttct 260

                                                                       
Query: 61  gagctgctgtgtgggtgctgggagttaacccctgtggaggagcagccagtgcttgtaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgctgtgtgggtgctgggagttaacccctgtggaggagcagccagtgcttgtaacc 320

                                                                       
Query: 121 actgagccatctctacagctccattttcactgattgtttcttatttttcctctgatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgagccatctctacagctccattttcactgattgtttcttatttttcctctgatttta 380

                                                                       
Query: 181 aatttattttatctttaacaagatttgtttatgtttattttatatgtattggtgtgttga 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttattttatctttaaaaagatttgtttatgtttattttatatgtattggtgtgttga 440

                                                
Query: 241 ctgaatgcatatctgcgtgagggtgttgaatcccctg 277
           |||| ||||||||||| ||||||||||||||||||||
Sbjct: 441 ctgagtgcatatctgcatgagggtgttgaatcccctg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)