BAC Information

Click to search

BAC

Clone NameMSMg01-266G20
Chromosome17 (Build37)
Map Location 71,245,909 - 71,246,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043630, LOC623112, LOC623143, Dlgap1, Tgif1, LOC668724
Downstream geneLOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266G20.T7 (MSMg01no266_g20.b1)MSMg01-266G20.TJ (MSMg01no266_g20.g1)
ACCAG407418AG407419
length750864
length of high quality
(start - end)
324 (45 - 368)253 (60 - 312)
definitionCHROMAT_FILE: MSMg01no266_g20.b1 PHD_FILE: MSMg01no266_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:12 2005CHROMAT_FILE: MSMg01no266_g20.g1 PHD_FILE: MSMg01no266_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGAGTTCTAAAGCAATTTGTCGCTACTCCTACATGGTCCTTGGC
AAGTGGGGAAGCTTCCTCCTACTGTGGGTTCCCATTACCGCTTCCCTAAA
GAATCTCTCCTGTCCTCTGGGGTCAGAGTCACCACTTTCGCTGGGTGGTG
GTGGTGCACACCGTTAATCCCACCACTTGGGAGGCAGAGGCAGGTGGATT
TCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGAACAGCCAG
GGCTACACAGAGAAACCCTGTCTCAACTAAACAAAACAAAACGAACAGTT
ACCACTTCAATGCTGCTTTTGCTAGGACCACCCCCCTGCTAATTCCAGTC
TGGGTCAGGTCATGGCCCACACCACCATGTTGGAAACTTAGGGGCCCCAG
ACTGTCCCAGGTCCTATATACACCTGACAGCCAGGCCCTTAGCTCAGTAG
GCATGTTGGCCACACACCATCACTAGCTTGAGCTGTGCTGTATTGTCTGG
TTGACCAGTTGGATTGTCTTCTCTGCTATCTTCATGCTCTCTAGTCCCAT
GGGATTTCACATATAAGTTCATAGATAACATGAGGGGCTGGAGATGGCTC
AGTGATTATAAACACTAGCTGCCTTGCCTGATGACCTGGATTCATTTCCC
AGTACCCATCCGGTGCCTCACAACCATCTGTAACTCCAGTCCCTGGAGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGTAATCCCTTCCAGCCTCCTTCTGAGTCTGCAGCAAATAA
CGTGGACACAGTGCTAAAAATGATGTTTTGTGGAGTTTTAAAAATCCAGG
ATGGATTCAACAGCAAAGCGCAAATACTTAATTATAACTATGGGATATTG
CATAAATGCCTAAAATGTTGTTAGTGCAAATGAAGACTGTAACAAGTGTT
GAAAAGAATTGAGAGTTAGAAATATAATTCAAAAGTGTTCATTGTAGCCA
CCAGAAAAAAACAAAGCTTATAGAAACCTCAAAAATTCACATCTTCTTTA
TATTTTTTATTTTTCGCCCCCCCCCGCCCGTGGAGANTTAATTTTTTATT
TTTTCTTTCCCCCCCCCCCCTTCTAAAAAAAAAAAAAAAATTTCCTTCGG
CGGTCGTGCGCCCCTTCCCCTTTCTACTCTTTCTCTTCCCTCTCTCCCCC
CTTTCCCTCGCCTTTTTTTTTTTTTTTTTTCCGCCCCCTCTATTTTCTTT
TTTTCGTTCATCCCTTCCCCCCCCGTTATTCTTTATTTTCGTCCCCCTCT
CCTCTTTTCCTTCCTCCCCTCCCCCTCCCCTCTTTTTCTCTACTATCTTT
CCCACATTCCCCTTTTCTTATCATCCACCCACCTCCCCTTTTCTCTTTAC
TCTTCCTCCACTTCACCCTTCCTACATCTATCCTTCTCCGTCTTTCCCTC
CGCTTTCTTCTTTATTTCATATCCCGCTATTTTCCTTCCTTCCTCCACCC
CTCTTTTTTATATTTATCTCGTCTCATTCTATCTCCCTCCTTATTTAATA
TTATATCTCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_g20.g1 MSMg01no266_g20.g1 CHROMAT_FILE:
MSMg01no266_g20.g1 PHD_FILE: MSMg01no266_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:12 2005
         (253 letters)



>mm_chr17_71245709_71246361
          Length = 653

 Score =  449 bits (232), Expect = e-131
 Identities = 247/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaatcccttccagcctccttctgagtctgcagcaaataacgtggacacagtgctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaatcccttccagcctccttctgagtctgcagcaaataacgtggacacagtgctaaaa 260

                                                                       
Query: 61  atgatgttttgtggagttttaaaaatccaggatggattcaacagcaaagcgcaaatactt 120
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 261 atgatgttttgtggagttttaaacatccaggacggattcaacagcaaagcgcaaatactt 320

                                                                       
Query: 121 aattataactatgggatattgcataaatgcctaaaatgttgttagtgcaaatgaagactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattataactatgggatattgcataaatgcctaaaatgttgttagtgcaaatgaagactg 380

                                                                       
Query: 181 taacaagtgttgaaaagaattgagagttagaaatataattcaaaagtgttcattgtagcc 240
           ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 381 taacaagtgttgaaaaggattgagagttagaagcataattcaaaagtgttcattgtagcc 440

                       
Query: 241 accagaaaaaaa 252
           ||||||||||||
Sbjct: 441 accagaaaaaaa 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)