BAC Information

Click to search

BAC

Clone NameMSMg01-267E11
Chromosome17 (Build37)
Map Location 38,993,923 - 38,994,443
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
Downstream geneLOC100043297, LOC100043300, EG668200, LOC672857, LOC627695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267E11.T7 (MSMg01no267_e11.b1)MSMg01-267E11.TJ (MSMg01no267_e11.g1)
ACCAG408044AG408045
length823722
length of high quality
(start - end)
119 (45 - 163)568 (75 - 642)
definitionCHROMAT_FILE: MSMg01no267_e11.b1 PHD_FILE: MSMg01no267_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:18 2005CHROMAT_FILE: MSMg01no267_e11.g1 PHD_FILE: MSMg01no267_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAATTCTCTCAAGCTGAAGTCCCCAAGTGAGGATGTGTCAGTCCA
ACTTAGGACAGAAGATAAAGCACTCATTATTTGAGAGGGAGGGAGGGACT
TGGGAGGGAAAGTGCATGCCACCCTTTTATCCTCTTCTCTTCCCCTCCCC
ATCCTCTCCCCCCTCCCACTTTGTCTCTCCCTCTGCTGCCCACTCCCCGC
TCTTTCTCCCATTTCCTCCCTTGCCCTCCCACTCCTCTTTCCCCCCTCTC
ACCACTCTCCCGCCCCCTTTTTTTTTTTTCTCCCTCCCCCCCCCCCCCCC
CCGCCCTGCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCCCTCTCT
TCTCTCTTTTTCTTCCTTTCGCCCCCCCCCCCTTTCAAAAAAAAAAAATG
TCTTTTGGCTCGCTGTTGCTTTTCTCTTTTCCTTCTTCCCCCCCTTCCTC
TCCCCTTACTCCCTCTCTCCCCCTCCCCCTCCTTCTCCCTCCACCTTTCC
TCATTTCCTTCCCTTCTCTCCTCTCTTCCTTTCCCTCCTCTCCCCCCCTC
TTTTTCTTTATTCTCCCCCCCCCCCCCTCCCTCTTCTCCCTTTTCTCCCC
CCCCCCCTCCTCCCTTCTCTCCTTCCCACTCCTACCTTTCTTTCTTTTCC
CTCCCTGCTCCCTCTCGCTTGTTTTTTTTCTCCTCCTCCCCCACTTATCT
TTCCTCGTGCTCTTCTCTTCTCTCCTCCTCTCCCATCCCCTCTTCCCCTC
TTCTCCCTCCTCCTCCTCCCTCC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGCTGAGAATGACATGTGTATTTAT
GGCATTTGGTCTGATTCTGCTGGTAGCAACAACTTTAGGGGTAAAATGAC
CATTTCTTAGGGGTATAAAATTACATGATCTCAATATAACAGTTAAATTT
TCAATTTCTCACATTACAAATTTACATTTAAGAAGAAGGAATGAAAATGA
TTATGTCTATTACCACAACTTGAGGAAGATTAGTAAAACATTATAGCATT
AGAAAGGTTGAGACTCACTCTTTTAAGGAAGGAAATTTTAGGGTATTTAT
TTTGAAGTGATAATAACTCTCAACTTCCTGCTACATTCATACATTATTTA
GAACGATATTTTTCTGCCTCTACATGGAGAGAATCATTTTCTTAGTATAT
TAAATTTATTTACATCATCTGTTCATCTTCTAATTGTGTGGTTAAGTAAA
AAGTATACAGTCATAATGGAGATTATACCAAAAGTCACAGTATTTAAGAA
ACTAGGGGGTTATTATTTTATTGGGAAATAACTGAATACTCACTAATTTC
AAGCATTTGTCACAATATATTTTGAATGAGAGTTTGAAGTGCGGTGTTTT
TGGGTTTTTGCTCCATATATATTTTAAAACTCACCCCCACTCCCTTTTTT
TCGCGCTCTCAACCCTCCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_e11.g1 MSMg01no267_e11.g1 CHROMAT_FILE:
MSMg01no267_e11.g1 PHD_FILE: MSMg01no267_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:18 2005
         (568 letters)



>mm_chr17_38993478_38994445
          Length = 968

 Score =  984 bits (509), Expect = 0.0
 Identities = 518/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 47  tggtagcaacaactttaggggtaaaatgaccatttcttaggggtataaaattacatgatc 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tggtagcaacaactttaggggtaaaatgaccatttcttaggggtataaaattacatgatc 907

                                                                       
Query: 107 tcaatataacagttaaattttcaatttctcacattacaaatttacatttaagaagaagga 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tcaatataacagttaaattttcaatttctcacattacaaatttacatttaagaagaagga 847

                                                                       
Query: 167 atgaaaatgattatgtctattaccacaacttgaggaagattagtaaaacattatagcatt 226
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 846 atgaaaatgattatgtctattaccacaacttgaggaagattagtaaaacattatagtatt 787

                                                                       
Query: 227 agaaaggttgagactcactcttttaaggaaggaaattttagggtatttattttgaagtga 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agaaaggttgagactcactcttttaaggaaggaaattttagggtatttattttgaagtga 727

                                                                       
Query: 287 taataactctcaacttcctgctacattcatacattatttagaacgatatttttctgcctc 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 taataactctcaacttcctgctacattcatacattatttagaacgatatttttctgcctc 667

                                                                       
Query: 347 tacatggagagaatcattttcttagtatattaaatttatttacatcatctgttcatcttc 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacatggagagaatcattttcttagtatattaaatttatttacatcatctgttcatcttc 607

                                                                       
Query: 407 taattgtgtggttaagtaaaaagtatacagtcataatggagattataccaaaagtcacag 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taattgtgtggttaagtaaaaagtatacagtcataatggagattataccaaaagtcacag 547

                                                                       
Query: 467 tatttaagaaactagggggttattattttattgggaaataactgaatactcactaatttc 526
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 546 tatttaagaaactagggggttattattttattgggaaataactgaatactcactgatttc 487

                                                    
Query: 527 aagcatttgtcacaatatattttgaatgagagtttgaagtg 567
           |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 486 aagcatttgtcaaaatatattttgaatgagagtttgaagtg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)