CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTACACAGTTTGAATATTTAGGTTGAAATTCTTTATCATGGCT
TTAATGTAAAGTGTAGGATGAAGAATCAAATATGTGTTTAAGTGTTCCAG
TCCCTTAGGGATATTACCCACCAGAGATAAAGTTTTTAAGTAATAACTAC
TTAGGCATAGTGACTCCGTGTTGTAATACCANATCGNATNANNGGTTGGN
AAGCATGGNAGGGCTATAATTTAAGGTCAGNNNCCNACCATTTCCCTTTA
AAAAATTTTTAAAAGGGTTCCAGGCAACTTCAAGAACAACTTACCCTTGG
AAAAAGAAAACCCAAAGAAAATTATAAAAAAAGAAGGAAAATGCCTTTCC
AAATAAATGGGTTCTTAACCGGGCCAAAAAATTTTTTTTTTTTGTTTTTT
TAAGGNAAAACCCCACGAAAAACCCCGGGGGGGTTAAAAGAGGGGGGGGG
AATTTTGGGGGGAATTTTTAAAAAAAAAGAGTTTTTCCCCCAAAAAAATT
CCCCAAAAGGGGGGGGTTCCTTTGGGGAAAAAAAAAAAAATTTTTGGGAA
AATAAATTTGGGGCCGGAAAAAAAAACCCCCCCGGGGGGNNCCCGGGGGG
GGGGGGGGGGGGGACCAAATAGGGGGCGCCCCCCCTTTTTTTAATTTTCT
CCNCAAGGGCTAAGTGTTGTTGGNNNNAGAGGCGCCANAAAGGGT

TTCCTTCCCCCCCCCCCNNCCCCACGCCTATTTCTGTTNATTATATATTT
NNNTCCCTCCCAATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAGGTGCTTTATAT
ACAAAATATTTCAAGTTGACCTAAGAGTCTTTCGCTAACATTCTTTGCCA
TTGTTTAATTATTGAAGACCATTGAAAGGACTAATAATTAGAGAGTTATT
ATTTGAATTACTGCAATGATATTGGTTTTTGTTAAATTTATGTTAAGATG
AGCATGGACCAAATCAATGAAGATGTGTATGCATTACTGAATTTAAAACT
GAAAGTGATAAAATGTAAGCTATGTCTCCGAGATATGGAAATAAAAAAGA
AATGTAATGTTGTTACCATTATTTAGTCCGTGCACCCCCACTCCATAATG
ATGCCACAGAGTTTTCTATCATCATTAAAGCCCGAAAAAAAGAAAAAAAC
ACTTCTTATGGTGTATACAGATCTTTTTATTCTTGAAATTTTGTCATGCT
GCCTTTATTTGTATTCTCTGTCTCCGTAAACACCTTTGAGCTACTGTCTC
AACATTAACTCATAAAGTCTCTTTCAGGGCTAGAAAGATGACTTAGTGGT
TAAGAGCACTTGTTGCACAAGCCAAGAACTTGGTCAAAATTTCCAGGTCT
TAAATTGTAGTTTAGAGCCACCTGTCTGAATACCCATCCTGGTCTCTATA
GAATTA

Query= MSMg01no267_i02.b1 MSMg01no267_i02.b1 CHROMAT_FILE:
MSMg01no267_i02.b1 PHD_FILE: MSMg01no267_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:36 2005
         (190 letters)



>mm_chr17_90634334_90634923
          Length = 590

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttacacagtttgaatatttaggttgaaattctttatcatggctttaatgtaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttacagagtttgaatatttaggttgaaattctttatcatggctttaatgtaa 264

                                                                       
Query: 65  agtgtaggatgaagaatcaaatatgtgtttaagtgttccagtcccttagggatattaccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgtaggatgaagaatcaaatatgtgtttaagtgttccagtcccttagggatattaccc 324

                                                                       
Query: 125 accagagataaagtttttaagtaataactacttaggcatagtgactccgtgttgtaatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 accagagataaagtttttaagtaataactacttaggcatagtgactcagtgttgtaatac 384

             
Query: 185 ca 186
           ||
Sbjct: 385 ca 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no267_i02.g1 MSMg01no267_i02.g1 CHROMAT_FILE:
MSMg01no267_i02.g1 PHD_FILE: MSMg01no267_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:36 2005
         (182 letters)



>mm_chr17_90773459_90774040
          Length = 582

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattgtttaattattgaagaccattgaaaggactaataattagagagttattatttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccattgtttaattattgaagaccattgaaaggactaataattagagagttattatttgaa 323

                                                                       
Query: 61  ttactgcaatgatattggtttttgttaaatttatgttaagatgagcatggaccaaatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttactgcaatgatattggtttttgttaaatttatgttaagatgagcatggaccaaatcaa 263

                                                                       
Query: 121 tgaagatgtgtatgcattactgaatttaaaactgaaagtgataaaatgtaagctatgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgaagatgtgtatgcattactgaatttaaaactgaaagtgataaaatgtaagctatgtct 203

             
Query: 181 cc 182
           ||
Sbjct: 202 cc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)