BAC Information

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BAC

Clone NameMSMg01-267J20
Chromosome17 (Build37)
Map Location 79,741,540 - 79,741,857
singlet/doubletsinglet
Overlap geneCdc42ep3
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277
Downstream geneLOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267J20.T7 (MSMg01no267_j20.b1)MSMg01-267J20.TJ (MSMg01no267_j20.g1)
ACCAG408282AG408283
length749740
length of high quality
(start - end)		321 (45 - 365)627 (75 - 701)
definitionCHROMAT_FILE: MSMg01no267_j20.b1 PHD_FILE: MSMg01no267_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:43 2005CHROMAT_FILE: MSMg01no267_j20.g1 PHD_FILE: MSMg01no267_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTTCCCATTTCTGGCTTAGAAGTCAGAAAGAGCCTTGCTCACGT
GATTCAAGGGTACCCCAACTCAATCTTCTCCCCCACACCCCTGCCCCTCA
AGTCTGTCCTGGGAATGGGACCCAGAGCCTAGGCAAATGGCCAGGCGCTC
AACCACCAAGCCCCACCCCCAGCTCCAGATCCGATCCTATCTCCTCCCTT
TTGCCCCAGCACAGTCACCATGGAGCCCGGAGCCCTCCCCTAGCACCCGG
CAACAGCACCACCATTTGCACATTAACAAGCAAAATTATATATTATTATA
TATTAATAATTATATTTTACTCTCCCCTCGCCCCCCCAACAGTCTTAAGG
AAGCATGATGGGAAAACTACCCTCTCACCTGAATACTAGCGCAGTGTCTC
CTGTGTGTTTCTGTGACCAACCAGGAGGAGAAAGTAGTAACTTCTCGGCC
CCTCCACTTCATTCAGGCTCCTAAACTGTACTGGCCCCTGGATTGTACTC
CTCCAAAAGGGATAAAGGCTACCTGGAACAAGTTTCTCCATGTTCTGGGG
AGGGCGACTGGAGGTCAACCAAGAAAGGTGAAAGAAAGCTCTAAAAGGAA
ACTAATGGGACACTAATCTGTAGTGATCTGAAGGATTCATTTCATTGGAA
TGAAATAGAGATTAAATTGTTCAGGGCAGGCCTAGGGCAGATAAGCAGN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGTATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCT
AAACACATGANACTCAAGAAAAATGAAGACTGAAGTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_j20.b1 MSMg01no267_j20.b1 CHROMAT_FILE:
MSMg01no267_j20.b1 PHD_FILE: MSMg01no267_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:43 2005
         (321 letters)



>mm_chr17_79741337_79742057
          Length = 721

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaacttcccatttctggcttagaagtcagaaagagccttgctcacgtgattcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacttcccatttctggcttagaagtcagaaagagccttgctcacgtgattcaa 263

                                                                       
Query: 64  gggtaccccaactcaatcttctcccccacacccctgcccctcaagtctgtcctgggaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggtaccccaactcaatcttctcccccacacccctgcccctcaagtctgtcctgggaatg 323

                                                                       
Query: 124 ggacccagagcctaggcaaatggccaggcgctcaaccaccaagccccacccccagctcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggacccagagcctaggcaaatggccaggcgctcaaccaccaagccccacccccagctcca 383

                                                                       
Query: 184 gatccgatcctatctcctcccttttgccccagcacagtcaccatggagcccggagccctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatccgatcctatctcctcccttttgccccagcacagtcaccatggagcccggagccctc 443

                                                                       
Query: 244 ccctagcacccggcaacagcaccaccatttgcacattaacaagcaaaattatatattatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccctagcacccggcaacagcaccaccatttgcacattaacaagcaaaattatatattatt 503

                             
Query: 304 atatattaataattatat 321
           ||||||||||||||||||
Sbjct: 504 atatattaataattatat 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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