BAC Information

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BAC

Clone NameMSMg01-268E17
Chromosome17 (Build37)
Map Location 53,383,133 - 53,383,418
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672987, EG328839, Kcnh8, LOC668506
Downstream geneEG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268E17.T7 (MSMg01no268_e17.b1)MSMg01-268E17.TJ (MSMg01no268_e17.g1)
ACCAG408774AG408775
length740740
length of high quality
(start - end)
684 (45 - 728)285 (83 - 367)
definitionCHROMAT_FILE: MSMg01no268_e17.b1 PHD_FILE: MSMg01no268_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:33 2005CHROMAT_FILE: MSMg01no268_e17.g1 PHD_FILE: MSMg01no268_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAACAGAGAAATCTGAATGGCTGAGAAGCACTTAGAGAAATGTTC
AAAGTCCTTATTGATCAGGGAAATGCAACTCAAACTGACGCTGAGATACC
ATCTTACACCAATCAAAATGGCCAAGATCAAAACATCAAGTGACAACATA
TGTTGGTGAGGATGTAGAGAAAGAACACTTCTCTTTTGCTGGTGGAATTG
CGAACTTTACAACCACTTTGAAAATCAATGTGTAGGTTCCTTAGAAAATT
GGAAGTAGGTCTATCAGAAGACCCAGCTATATCACTACTGGGTGGGCATA
TAGTCAAAAGATGTTCTACCATGCCACAACCGGCACGTGTTCTACTGTGT
TCATAGTGGCCTTATTTGTGACTACCAGAAGCTTGAAACAACCCAGATGT
GCCACAATGGAAGAATGGATCCAGAAAATGTGGTTCATTTACAGAATGGA
ATACTACTCTGCTATTAAGAATTAGAACATCCTGAGTTTTGTAGGCAAAT
GGATTGAACTAGAAAATATCATCCTGAGTGCAATAACTCAGACTCAAAAG
GACATGCAAGGTATGTACTCACTAATAAGTATTAGCCAAAAACATACAGA
ATACTCAGTATACAATCCACAGAATTCAAGAAGGTTAACAAGCTTAAGGG
ACCAATTAAGTATGCCTCAATCCCACTTAGAAGGGGGAAG
ACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATTCATCAGTTGAACTG
TATTTGGGGAGTCATATATTATTCAACACAATGAGTGTTTTTAACGCCTC
ATATCTACCGTGTTATGTGTGTGTGTGTCTTAAGTCTCCATTAAAAACAA
ACAAGCAAAAAAACCTAATCAAAGCACCTGAATAAAGCCAAAGCTACGGT
ACTGACTCAAGCTGGCTTTACAGTTTGGTGCTCTGACAGGACTTCAAAAC
TTTCTCCAGAACAGGAGAAATGTTCTGGCTTTGGTTGGAAAAAATGTGAT
TCCAGAATGACATAGACTCATTAGCGCAAGCCCGGCTTCTAAACCACACA
GCAGCTGAGAGCAAATGAGTCCTCTCAACCAAGCAGCCTGGGATTAGGAC
ACTAGTGTTGTGCAGAACCTCATTCTGATATAGCTCACTTTATGGCAATT
ATGTCTCTAGATTCCAGTAACCAGAGGTCTCAGAGTGATTTGGCAAAATC
TGGCCNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCGGTAT
GCTGAAAACCACCCCAAACTTAAGGATATAAAATAATGCTTTTATTATGT
TTCCCAATACCTAATAAGAGCATAGCCAGATTATGCTTGTTGGTGGTGTT
GGTTTGCTTTAAAAGCGCACACTGGAAGTGACCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_e17.g1 MSMg01no268_e17.g1 CHROMAT_FILE:
MSMg01no268_e17.g1 PHD_FILE: MSMg01no268_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:33 2005
         (285 letters)



>mm_chr17_53382933_53383618
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattcatcagttgaactgtatttggggagtcatatattattcaacacaatgagtgttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gattcatcagttgaactgtatttggggagtcatatattattcaacacaatgagtgttttt 427

                                                                       
Query: 61  aacgcctcatatctaccgtgttatgtgtgtgtgtgtcttaagtctccattaaaaacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aacgcctcatatctaccgtgttatgtgtgtgtgtgtcttaagtctccattaaaaacaaac 367

                                                                       
Query: 121 aagc-aaaaaaacctaatcaaagcacctgaataaagccaaagctacggtactgactcaag 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagcaaaaaaaacctaatcaaagcacctgaataaagccaaagctacggtactgactcaag 307

                                                                       
Query: 180 ctggctttacagtttggtgctctgacaggacttcaaaactttctccagaacaggagaaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctggctttacagtttggtgctctgacaggacttcaaaactttctccagaacaggagaaat 247

                                                         
Query: 240 gttctggctttggttggaaaaaatgtgattccagaatgacatagac 285
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gttctggttttggttggaaaaaatgtgattccagaatgacatagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)