TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAGTTATATATTGAACTCTATTGGTTTGAAGATTTGAATCTGAA
CCACCAAATTATCTGGAATATTTCTTACATTCCAGGAAAATAAATTATCA
AAAGTAAAGCCAATGGAAAGACAGAGGCTGCATTTTTCATCCGTCTTTGT
TTAATAATACTGTACAAATAATTATTTTAATTTATAATTTGTTTCAAGTG
TGTAAAAAATAAATGTACAATCATATTCAAAGGGATATAGACACTGAGTT
AATTACAAGCAGGTCAAAACAATGCCACACACTGAAAGTAATGTTGCCAT
CTTGTGGCCACATGTTAATTGCAACTTGAAAACCGTTTTCTTTAACTGAT
TAAAAAATTCAACTAAACATTTTAAATATGCATAATTATAACCAGCAATT
TAAAACATAGCACAATTATGCAAACCATTTTCATAAATCTATACATAATC
ATATCAAGTAATATTAATATACTCACATGTATTTTTTTTAAGTATGCCTT
GAATTTTGGTTTAGTATTTTGGGGTATTTTTAACAAATTTATGATTCAGG
CTATTGTTTGTGTTTTGTTTCTTTGTTTTAGATGGAATCCTTTTATGTAG
CTCAGGGTGATCTTGTACTCCTACTTCATCTTACTGAGTGCTGTTTCCTT
GCTCAAAGTTN

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTCAGTATCTTTATTTTTTTATG
AGTTTTGTTTTTTTTCAGAACCCTTGTACTTCAGTTACATTTTAAAGAAA
ATCCCACAGCTTGAAGATTGTAACCCACCCTCAGCCTGAAACAGGCTGAT
CCAGACTTTGACCTTGCTTCCACTAAGAAGGAGACGACCTGGGGTGGAGC
CTTCCTGCCTAGATGGCTCTATTGTTCATCCAAGGCTGCTGTTCTTCTTC
AAGACATCTCTACCTACTGAGAGGCCAATGAGATATTCTGGAGGCTACAC
CCTATCACCTGCATTTGGTTCCAGCCTCCCAGAATGGATTAGCCAGGGAT
GAGCCTCCCCCATTTTATAAGCACAGTTTGCTATTAAACATTTGAGCCTT
GATCAGGAACCTTTTCTTGGCTTCCATTTTTCTCTGGACCTTCTAGTTTC
TGACTTTTCAGCCCCAGTTTGCCTCCTAGGAGAAATCCCGGTCCATGTGA
GCAGAGGGATGGCTCCCAACAGAAGATGAAATTTTTTTTTTCTCATGATT
AGATCCATATTATCTCATTCTCTGAAGTAGCTGGAATTATAGGCTGAGTA
AATTTACAAAAGACTAATTAATGTAGCTTTCTTTAATATCTTTTATATGG
GCTTCATGTCATTTTTAAAAATAGTTN

Query= MSMg01no268_g20.b1 MSMg01no268_g20.b1 CHROMAT_FILE:
MSMg01no268_g20.b1 PHD_FILE: MSMg01no268_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:42 2005
         (662 letters)



>mm_chr17_40567102_40568163
          Length = 1062

 Score = 1241 bits (642), Expect = 0.0
 Identities = 654/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagttatatattgaactctattggtttgaagatttgaatctgaaccaccaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagttatatattgaactctattggtttgaagatttgaatctgaaccaccaaat 264

                                                                       
Query: 65  tatctggaatatttcttacattccaggaaaataaattatcaaaagtaaagccaatggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatctggaatatttcttacattccaggaaaataaattatcaaaagtaaagccaatggaaa 324

                                                                       
Query: 125 gacagaggctgcatttttcatccgtctttgtttaataatactgtacaaataattatttta 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacagaggctgcatttttcatctgtctttgtttaataatactgtacaaataattatttta 384

                                                                       
Query: 185 atttataatttgtttcaagtgtgtaaaaaataaatgtacaatcatattcaaagggatata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttataatttgtttcaagtgtgtaaaaaataaatgtacaatcatattcaaagggatata 444

                                                                       
Query: 245 gacactgagttaattacaagcaggtcaaaacaatgccacacactgaaagtaatgttgcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacactgagttaattacaagcaggtcaaaacaatgccacacactgaaagtaatgttgcca 504

                                                                       
Query: 305 tcttgtggccacatgttaattgcaacttgaaaaccgttttctttaactgattaaaaaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttgtggccacatgttaattgcaacttgaaaaccgttttctttaactgattaaaaaatt 564

                                                                       
Query: 365 caactaaacattttaaatatgcataattataaccagcaatttaaaacatagcacaattat 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 caactaaacattttaaatatgcataattataaccagtaatttaaaacatagcacaattat 624

                                                                       
Query: 425 gcaaaccattttcataaatctatacataatcatatcaagtaatattaatatactcacatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaaaccattttcataaatctatacataatcatatcaagtaatattaatatactcacatg 684

                                                                       
Query: 485 tattttttttaagtatgccttgaattttggtttagtattttggggtatttttaacaaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tattttttttaagtatgccttgaattttggtttagtattttggggtatttttaacaaatt 744

                                                                       
Query: 545 tatgattcaggctattgtttgtgttttgtttctttgttttagatggaatccttttatgta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatgattcaggctattgtttgtgttttgtttctttgttttagatggaatccttttatgta 804

                                                                     
Query: 605 gctcagggtgatcttgtactcctacttcatcttactgagtgctgtttccttgctcaaa 662
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 805 gctcagggtgatcttgtactcctactttatcttactgagtgctgttttcttgctcaaa 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)