BAC Information

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BAC

Clone NameMSMg01-268O15
Chromosome17 (Build37)
Map Location 46,328,966 - 46,442,511
singlet/doubletdoublet
Overlap genePolh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10
Upstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2
Downstream geneBC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268O15.T7 (MSMg01no268_o15.b1)MSMg01-268O15.TJ (MSMg01no268_o15.g1)
ACCAG409190AG409191
length741717
length of high quality
(start - end)		314 (46 - 359)186 (108 - 293)
definitionCHROMAT_FILE: MSMg01no268_o15.b1 PHD_FILE: MSMg01no268_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:16 2005CHROMAT_FILE: MSMg01no268_o15.g1 PHD_FILE: MSMg01no268_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,328,966 - 46,329,275)(46,442,326 - 46,442,511)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGATCATTCACAAATTCACAGTTGTGAAATAGAATAAAATGTG
ATTACACAGCAAGGGAAATACAGACATGTTGGTTTAAAGATGCAGTAATG
AGATAGGTATAGGGCAGAGTACATGGGAGAAGAAAAAGTCCAAACACCGT
AGAGAAGATGGGTCAGACGAGCACGCAGAGGAAACCTTGCCACCCTTCAG
TGACTACTGCATCCCTCCACAGCTGCCATGTCTGCTGCCAGCATCCTAAC
CATGGCAAGTGAGCAACACTTTCCCGCTCTGTATGTTCCCCTTGGTGACC
ATGACCTGATTTCGTTGAATACACCCCCACCCCCCTCTCTGACCCTAAGC
TCGGGTCTTTAGCGCCCGTCCTCCCTGCACAACTCCTGACAGAGCAACTC
CTTTATGCTTATGACTGTGCAAACATTCTAACTCAACATAACTAAAATCA
AGCACAGCTTCTTTCTCAAAGGGTCCCTCTCCCAATGCCTTGTTTTTAAT
AAAAGCTTAGAATTTACCTAACATTAACTTTATTCTTTCATTTTCTACTG
TGTAGTCAGCCAACAGAGCCCACTTCAAAACAGTTTCCTGTATCACTTCA
ACTCCCCTGCTTCACTTAAACTACCTTAACTCTTTGGGAGCACTGGCTGC
TCTTCCAGAGGCCCCTGGTTCCATTCCCAGCACGCACATGG

TGGCGGCCGCCTGGCTTCCCCCACTGGGNGAACNANAGAAGGATTCCAAA
ATTAGAGGACGNGGNGNTGGNGNACCGGNCAGGGTTGNCAAAGGNCCTAG
ACCCCGAGACCTTCCGCGNGGAGCCCGGAGAGAAGCTGGGCATCGTGGGC
CGCACAGGCTCCGGCAAGTCTTCCCTGTTTCTGGTGCTCTTCCGGCTGCT
GGAGCCCAACGCAGGGCGAGTGCTCCTGTTTATTGTGGACACCAGCCAGC
TGGAGCTGGCCGAGCTCAGGTCTGGGAGGCGGGAGATCAGGGAGTTTTGT
GTATTCAGNCCNCNCGGAAGGNGNAAAACAGCCATTGTTTGGTGGTTTTC
CCCGGAACANGCCCCGNAAGNTGTGTGTTTTGTTNNAGGTGATGGTNNTT
NAATNTTTNTAGNNNNAAATGGNNTNNAGTTTNNNGGGTTTNNANAATAN
GTGTTCTGGTCNAGAAANTANTTGTGGTCTTNAAATNAAAGNCTCTCGGG
AACTGAAATCCCAGACGCCATGAGCCCCTGGGCCCCTGGCTTGACATGCA
GTACATGGGGCTGCTTGGAGTCTGGGTCAGTTGTACTTGGCCACAAGTGA
TCTCTCTGAGTGATATACCCCATTTTTTTTTTTTTTTCTTTGTATCACTT
TTTCTCAGTTCCACGATGTGGGAAGGCGGAAGGAAGCTCCACCCTAAAGC
AAGAGCCATGCCTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_o15.b1 MSMg01no268_o15.b1 CHROMAT_FILE:
MSMg01no268_o15.b1 PHD_FILE: MSMg01no268_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:16 2005
         (314 letters)



>mm_chr17_46328762_46329475
          Length = 714

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgatcattcacaaattcacagttgtgaaatagaataaaatgtgattacacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgatcattcacaaattcacagttgtgaaatagaataaaatgtgattacacag 264

                                                                       
Query: 65  caagggaaatacagacatgttggtttaaagatgcagtaatgagataggtatagggcagag 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 caaaggaaatacagacatgttggtttaaagatgcagtaatgagataggtatagggcagaa 324

                                                                       
Query: 125 tacatgggagaagaaaaagtccaaacaccgtagagaagatgggtcagacgagcacgcaga 184
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tacctgggagaagaaaaagtccaaacaccatagagaagatgggtcagacgagcacgcaga 384

                                                                       
Query: 185 ggaaaccttgccacccttcagtgactactgcatccctccacagctgccatgtctgctgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaaaccttgccacccttcagtgactactgcatccctccacagctgccatgtctgctgcc 444

                                                                       
Query: 245 agcatcctaaccatggcaagtgagcaacactttcccgctctgtatgttccccttggtgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcatcctaaccatggcaagtgagcaacactttcccgctctgtatgttccccttggtgac 504

                     
Query: 305 catgacctga 314
           ||||||||||
Sbjct: 505 catgacctga 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no268_o15.g1 MSMg01no268_o15.g1 CHROMAT_FILE:
MSMg01no268_o15.g1 PHD_FILE: MSMg01no268_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:16 2005
         (186 letters)



>mm_chr17_46442126_46442711
          Length = 586

 Score =  308 bits (159), Expect = 2e-88
 Identities = 179/186 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccttccgcgnggagcccggagagaagctgggcatcgtgggccgcacaggctccggcaa 60
           ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaccttccgtgtggagcctggagagaagctgggcatcgtgggccgcacaggctccggcaa 327

                                                                       
Query: 61  gtcttccctgtttctggtgctcttccggctgctggagcccaacgcagggcgagtgctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtcttccctgtttctggtgctcttccggctgctggagcccaacgcagggcgagtgctcct 267

                                                                       
Query: 121 gtttattgtggacaccagccagctggagctggccgagctcaggtctgggaggcgggagat 180
           |   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggacaatgtggacaccagccagctggagctggccgagctcaggtctgggaggcgggagat 207

                 
Query: 181 caggga 186
           ||||||
Sbjct: 206 caggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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