BAC Information

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BAC

Clone NameMSMg01-269F12
Chromosome17 (Build37)
Map Location 61,937,464 - 61,937,654
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269F12.T7 (MSMg01no269_f12.b1)MSMg01-269F12.TJ (MSMg01no269_f12.g1)
ACCAG409485AG409486
length729737
length of high quality
(start - end)
191 (121 - 311)616 (69 - 684)
definitionCHROMAT_FILE: MSMg01no269_f12.b1 PHD_FILE: MSMg01no269_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:47 2005CHROMAT_FILE: MSMg01no269_f12.g1 PHD_FILE: MSMg01no269_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGAACGGATCCGCGGAATTCA
TCAGTTTCCCGAGAAAACTGGCATATAGGGTGAGCTTATTTATTTTTAGA
TGTAGTGCCCCTTTGACTGTGAATGTGTATAAACATGAATCAGAAATAAA
GAAGTATGACAGAATTCTAGAAGGCAATATTTAATTTTGCTTTAAAAATG
AGTTCTCACCATTTTTCATTTGTTAAACATGATTCATATAATTTCCCCTA
TTTAAGTAGTGAGAAATAGATAATATTGGAGAGTTTATTCTATGATTTTT
CTCCTTTGACGAGATTTTTTTTCACAAAATGAATAATTGTTTCTGCTAGT
TATTATTATTGGTTCCCANACCCAACCCCCGGTCTGGAGTGAAAAANAAA
CAAAAATACCACCAAAAAAAAAGAAGNCATATCTCTTGCAGGGGCTAGCC
TGACAGAAATAGGAAAACACACATATAATTGGATCAGAGGGATGGTGTCC
ACTCTCTCTCTCTTTCACCTTCCAGCACTGTAGACTCACGCTTATCCCAC
AAGAGAAGAATAAGGAAACAGAATATAGGAGTGAAGAAATAAAAACAAAA
TAACAGTGACTTTTGGGAGGAACTCTGATCAGATATCTTCTCCCTTTGGG
AAAATTTTGTCTTTTCTTATTAAATTGCGGAGAAAGCTCTGTCTAGATGA
AAAGAACTTTATTTATAACTCAAAGTGTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGGAAACTTGCTGTCCCAGCAAAGAAGGAT
GCTGCTGGTGGTGAGGTGAGCATGGGTGGGCAGGTGGAGGAGCGCCTTCT
CAGAGATGTGGGACAAAGAACTTGGGAAGGGGGATCAGGAATGGGGGCAA
CTTTTGAAATGTAAATAAAATAATTTAATAAAAAATAAAATATCGAATCA
ATGAATAAATTAACAGTTTTGGAGAAGAAAGCAATCACAAGATGGGTGAA
GGTTGGGAGGCACCTGGTGGGAAAGGGGACAGGGAGTAGAAGAGGGGAAC
ATGGTCAGGTATTGGGTGAGAAGAACAGGAGCATGTACTAGATACCTGGG
AGTTGAGAGACTCTCAGGACTCAAAGGGAAGGACCTTAGAGGAAATGTCG
TACAGAGGGGAAAAGGATCTTGAAGAGTCCACCTCCAGCAGGAAGACAGG
GCATCAAGTAGAGTGATGGGGTTGCCATCCCACAGTCAAAAACTCTAACT
CAGAATTGTTTCTGTCTGANAGAACTGAGGGGACAAAAATGGAGAAGCGC
CTCGGGAAAGGAAGGTCCAGTGACAGGCACAAATGAGATCCAGCTCAGGG
GGAGGCCCCAAGGTCTGACACTATTCCTGATGCTGTGNAGGGCTCACAAA
GAGAGGCCTGACAAGACTGCCCTTCGAAAGGCCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_f12.b1 MSMg01no269_f12.b1 CHROMAT_FILE:
MSMg01no269_f12.b1 PHD_FILE: MSMg01no269_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:47 2005
         (191 letters)



>mm_chr17_61937264_61937854
          Length = 591

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatgtgtataaacatgaatcagaaataaagaagtatgacagaattctagaaggcaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaatgtgtataaacatgaatcagaaataaagaagtatgacagaattctagaaggcaatat 332

                                                                       
Query: 61  ttaattttgctttaaaaatgagttctcaccatttttcatttgttaaacatgattcatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttaattttgctttaaaaatgagttctcaccatttttcatttgttaaacatgattcatata 272

                                                                       
Query: 121 atttcccctatttaagtagtgagaaatagataatattggagagtttattctatgattttt 180
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atttccccaaggtaagtagtgagaaatagataatattggagagtttattctatgattttt 212

                      
Query: 181 ctcctttgacg 191
           |||||||||||
Sbjct: 211 ctcctttgacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)