BAC Information

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BAC

Clone NameMSMg01-270I21
Chromosome17 (Build37)
Map Location 16,740,079 - 16,740,459
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
Downstream geneLOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270I21.T7 (MSMg01no270_i21.b1)MSMg01-270I21.TJ (MSMg01no270_i21.g1)
ACCAG410358AG410359
length729762
length of high quality
(start - end)		686 (41 - 726)382 (381 - 762)
definitionCHROMAT_FILE: MSMg01no270_i21.b1 PHD_FILE: MSMg01no270_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:14 2005CHROMAT_FILE: MSMg01no270_i21.g1 PHD_FILE: MSMg01no270_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCATTTTTTAATGCGGTTGTTCGATTTTCTGA
AGTCCACCTTTTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCTGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATAGATCGATTCGCATTCTT
CTTCATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTTTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTA
GTANAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCT
TGAGAAGAGTTTTTGCTATCCTAGGTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAAAGGTCAGGAAGCAGGAGCTGATGCAGAG
GCCATGGAGGGATGTTCTCTACTGGCTTGCTTCCTCTGGCTTGCTCAGCC
TGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCACCCACA
AGGGGCCTTTCCCCTTTGATCACTAATTGAGAAAATGCCTTACAGTTGTA
TCTCATGGAGGCGTTTCCTCAACTGAAGCTCCTTTTTCTGTGATAACTCC
AGCTGTGTCAAGTTGACACAAACTAGCCAGTAAGAGAAATAACCATGGAG
GAGAATCTCTTTGTTGTTCTAGAAATGCCAGCATGGCTTTTGGGAAAGGA
GTTCAGTAAAGGAGAATCCTTCACACTTCCCTGCTGAGTCCTAGTATGAG
ACCCGGGAAAAAGAAATCCCAGAATGCTTCATTAAACAAGTCTGAACTCC
ACTAGTTAGTCAACATTGGTAGATTAATCTGAAAAATCTCTTTTGTGGCA
TTAGTGGCTTTATTAAAAGACACAAAGAGAATCTGGCCGAATAACAAATA
AGCAGCAGATCAAAGAAGAAGAGTATACAAATTATAATAAAGAATATATA
ATGATATACCTTATAATAATTCATAATCATGTTAATCAAAATTATTCTGT
ACAATTACGACAAGGGTCTTTACAAATGAATTCTCTCAGTATTAAGCTAA
TACATAATTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_i21.g1 MSMg01no270_i21.g1 CHROMAT_FILE:
MSMg01no270_i21.g1 PHD_FILE: MSMg01no270_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:14 2005
         (382 letters)



>mm_chr17_16739879_16740660
          Length = 782

 Score =  729 bits (377), Expect = 0.0
 Identities = 380/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatggcttttgggaaaggagttcagtaaaggagaatccttcacacttccctgctgagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatggcttttgggaaaggagttcagtaaaggagaatccttcacacttccctgctgagtc 260

                                                                       
Query: 61  ctagtatgagacccgggaaaaagaaatcccagaatgcttcattaaacaagtctgaactcc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ctagtatgagacccgggaaaaagaaatcccaggatgcttcattaaacaagtctgaactcc 320

                                                                       
Query: 121 actagttagtcaacattggtagattaatctgaaaaatctcttttgtggcattagtggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actagttagtcaacattggtagattaatctgaaaaatctcttttgtggcattagtggctt 380

                                                                       
Query: 181 tattaaaagacacaaagagaatctggccgaataacaaataagcagcagatcaaagaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattaaaagacacaaagagaatctggccgaataacaaataagcagcagatcaaagaagaa 440

                                                                       
Query: 241 gagtatacaaattataataaagaatatataatgatataccttataataattcataatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtatacaaattataataaagaatatataatgatataccttataataattcataatcat 500

                                                                       
Query: 301 gttaatcaaaattattctgtacaattacgacaagggtctttacaaatgaattctctcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttaatcaaaattattctgtacaattacgacaagggtctttacaaatgaattctctcagt 560

                                
Query: 361 attaagctaatacataattga 381
           |||||||||||||||||||||
Sbjct: 561 attaagctaatacataattga 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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