Query= MSMg01no270_o07.b1 MSMg01no270_o07.b1 CHROMAT_FILE:
MSMg01no270_o07.b1 PHD_FILE: MSMg01no270_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:39 2005
(617 letters)
>mm_chr17_28117725_28118741
Length = 1017
Score = 1156 bits (598), Expect = 0.0
Identities = 610/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 5 gaattcctaaagtctgcggctagcctaggctttctggtaagtgcaggctagccagggagt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctaaagtctgaggctagcctaggctttctggtaagtgcaggctagccagggagt 263
Query: 65 gtcatagaaccttgtctgaaaacagcttggagacttgagtgatgatacagtcactaaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtcatagaaccttgtctgaaaacagcttggagacttgagtgatgatacagtcactaaatt 323
Query: 125 cggaaaattaaaggttgatggctagtatttcctaatacacagctcatgtttgtgtttgct 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagaaaattaaaggttgatggctagtatttcctaatacacagctcatgtttgtgtttgct 383
Query: 185 gcttgtcctcatagtgggtagtcattcatttcttttt-aaaaaaaaaaatatttatttta 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 gcttgtcctcatagtgggtagtcattcatttctttttaaaaaaaaaaaatatttatttta 443
Query: 244 tatgagtatgctgttgctgttttcagacacaccagaagagggcatcagatcccattacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatgagtatgctgttgctgttttcagacacaccagaagagggcatcagatcccattacaa 503
Query: 304 atggttgtgagccaccatatggttgctgggaattgaactcaggacctgtggaagagcagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atggttgtgagccaccatatggttgctgggaattgaactcaggacctgtggaagagcagt 563
Query: 364 cagtgctcttaaccactgaaccatctctccagcccagtcacttttctttccctttcgcct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagtgctcttaaccactgaaccatctctccagcccagtcacttttctttccctttcgcct 623
Query: 424 tccccttcctcctccttctctccctcctttctgcatccctgtccccactacctgtcattc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccccttcctcctccttctctccctcctttctgcatccctgtccccactacctgtcattc 683
Query: 484 ttaccacccatcaatcatgacactattgctctcatggttaggttcaggctacacgcattg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttaccacccatcaatcatgacactattgctctcatggttaggttcaggctacacgcattg 743
Query: 544 cgtgggaatgccatagaagtgacactttctgagcatgtgactatctccttgatgacagtg 603
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 744 cgtgggaatgccatagaagtgacactttctgagcatgtgactgtctccttgatgacagtg 803
Query: 604 gtttcctctggagg 617
||||||||||||||
Sbjct: 804 gtttcctctggagg 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_o07.g1 MSMg01no270_o07.g1 CHROMAT_FILE:
MSMg01no270_o07.g1 PHD_FILE: MSMg01no270_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:39 2005
(633 letters)
>mm_chr17_28293909_28294941
Length = 1033
Score = 1154 bits (597), Expect = 0.0
Identities = 624/633 (98%)
Strand = Plus / Minus
Query: 1 aagaagggtctcaggcttagaggacgggaaggctgcagtaagtgacggggggtgggcagc 60
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 833 aagaagggtctcaggcttagaggacgggaaggctgcagcaagtgagggggggtgggcagc 774
Query: 61 cacaggcacactggaaagtcagtaccaccagatgcttgggtgtgaggtgggcctggggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cacaggcacactggaaagtcagtaccaccagatgcttgggtgtgaggtgggcctggggca 714
Query: 121 tcaggtgaggggtagcaagggggtttgccagggtaaagaggaagagaggggctggagcca 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcaggtgaggggtaggaagggggtttgccagggtaaagaggaagagaggggctggagcca 654
Query: 181 ccctactgattcatttcagcccaaggctaactgctctggaagcaactactgtgtcctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccctactgattcatttcagcccaaggctaactgctctggaagcaactactgtgtcctggc 594
Query: 241 accagttcacagcagggacactggctgtggtcattcccctacctttctagtcaaccagag 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 593 accagttcacagcagggacactggctgtggtcattcccctaccacactagtcaaccagag 534
Query: 301 actgggtcagccgctcagctgaccgccccagaatccctcaagccttggttgcccagcacc 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 533 actgggtcagccgctcagctgaccgccccagaattcctcaagccttggttgcccagcacc 474
Query: 361 cctgctaacagttccgaacctggtaatgtttcaacatgggaggaagaggagggtgggact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cctgctaacagttccgaacctggtaatgtttcaacatgggaggaagaggagggtgggact 414
Query: 421 cctggggagggcaggtagtcaagtgtgccctttagtctctcagagtggtccttccacctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cctggggagggcaggtagtcaagtgtgccctttagtctctcagagtggtccttccacctg 354
Query: 481 tcctcttattggtcttcattcccacatcagtaactatccagtacctagacatcactgtcc 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcctctcattggtcttcattcccacatcagtaactatccagtacctagacatcactgtcc 294
Query: 541 cccagggtctctcttccccttcagtcccagaccccaccccaatcctgtcacaagtggctt 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 293 cccagggtctctcttccccttccgtcccagaccccaccccaatcctgtcacaagtggctt 234
Query: 601 cacccaccaatgcatgtcttcccgtcggtgtgg 633
|||||||||||||||||||||||||||||||||
Sbjct: 233 cacccaccaatgcatgtcttcccgtcggtgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
