BAC Information

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BAC

Clone NameMSMg01-270O15
Chromosome17 (Build37)
Map Location 35,081,678 - 35,082,368
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1
Downstream gene1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270O15.T7 (MSMg01no270_o15.b1)MSMg01-270O15.TJ (MSMg01no270_o15.g1)
ACCAG410615AG410616
length719740
length of high quality
(start - end)
651 (69 - 719)478 (72 - 549)
definitionCHROMAT_FILE: MSMg01no270_o15.b1 PHD_FILE: MSMg01no270_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:41 2005CHROMAT_FILE: MSMg01no270_o15.g1 PHD_FILE: MSMg01no270_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGTGCCTCTCGGTGGCCAGAGACATCAGATCATCCTTTAAGAAAA
GGTCTTTTATAACACAGGGTGGCACAGAACTTCCCTGTTGCAGGGGTTAC
AGGTTGGGGGCCACCATACCTGGCTGTAGTGTGAGTTTCTTAACTGTAAA
GTCATCTTTTATTGTGCCTGCTGGCCAGCACCCCTGAGAAAGGAGTCTCC
AGTGTGTTATACTCTGGCTCCGCTCAAAACAGTTGTCTTCCAAGAGAGCA
GCCCTTTGAGAATCACCAGCCAAAGCTATGTTTTTAGGCAGGGCATGGTG
GCAAATGCCTGAAGTCTTCAGTACTCTGAAAGTAGAGGCAGAAGGATCAG
GAGTTTGTGGACACTGTACCTCACATAGTGAGGGGCTGGAGAGCGGTTCA
GTGAGCCACAGCTGCTCTTGCAGAGAACCTGGGTTCCCTTCCCACTGCCA
CATCAATATACCCACAACCACCTGTAAGTCCAGTTCCGGAGGATCCGACT
CCCCCTTCTGGCCTCCATGGGCACTATACTTGTGTGGTGACACAATCACA
CACACACACACACACACACACACACACACACGTAAAAATAAATGTATAAA
GACAAACACAAGTCAGACATACAGAACATAAAGATGTGTGTGAAGCCCAC
CCACACCCCTCAGTCTGTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGGCTCAGATGTCCCTGCCCCATTCCA
ACGGAACTGTGGTTCTGCCACTATAAGATCTCTGCTTCTTGAAAGCCGTC
TGCCTTAACAGACCTCTTGTTAGACGTCACCACGCTGCCTGGGCTTTAAT
CCAAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGCTTGAGGCCAGC
CTGGTCTACAAAGTGAGTTCCAGGGCAGTCAGAGCTACACAGAGAAACCC
TGTCTCAAAAAAAAAAAAAAAAAAAAAAGTGACCATCCTTGCCTGTTTGG
CGGGTGCTTCTCTCCTCTTTAAACCCCATACTCAAGGGCAGGGTTGGGCA
GATCTATGAGTTGGAGGCCACCCTGGTTTACAAAGTAGGAGGCCACAGCC
AGGGCTCCATAGTGTGAGATCTGTCTCAAAAAAAGCTATCAAAACAACAA
CAACGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTGGGGAGGCA
GAAGGCAGTGGATAGAGCGAAGTCACGTAACGCAAAAAAAAAAAACCACC
TTGTCATTGTGGCACTCCTTNGAAGCTACGACTTTNGCTAGAANAAAAAC
TCTGTCGCAAAAGGCGGATCCTTTACCCCTCCANTTTTATAACTCTTTAN
ATCCGCACCGAAACACAAAATCTATTCATTAGGAGCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_o15.b1 MSMg01no270_o15.b1 CHROMAT_FILE:
MSMg01no270_o15.b1 PHD_FILE: MSMg01no270_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:41 2005
         (651 letters)



>mm_chr17_35081530_35082580
          Length = 1051

 Score = 1025 bits (530), Expect = 0.0
 Identities = 630/702 (89%), Gaps = 63/702 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccagagacatcagatcatcctttaagaaaaggtcttttataacacagggtggcacaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 149 ggccagagacatcagatcatcctttaagaaaaggtcttttataacacagggtggcataga 208

                                                                       
Query: 61  acttccc--------------------------------------tg--t---------- 70
           |||||||                                      ||  |          
Sbjct: 209 acttcccatatagcccaggctagcctcgaataaagacaatcctcctgcctcagtctccca 268

                                                                       
Query: 71  --tgcaggggttacaggttgggggccaccatacctggctgtagtgtgagtttcttaactg 128
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtgcaggggttacaggttgggggccaccatacctggctgtagtgtgagtttcttaactg 328

                                                                       
Query: 129 taaagtcatcttttattgtgcctgctggccagcacccctgagaaaggagtctccagtgtg 188
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taaaatcatcttttattgtgcctgctggccagcacccctgagaaaggagtctccagtgtg 388

                                                                       
Query: 189 ttatactctggctccgctcaaaacagttgtcttccaagagagcagccctttgagaatcac 248
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttttactctggctcggctcaaaacagttgtcttccaagagagcagccctttgagaatcac 448

                                                                       
Query: 249 cagccaaagctatgtttttaggcagggcatggtggcaaatgcctgaagtcttcagtactc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 449 cagccaaagctatgtttttaggcagggcatggtggcaaatgcctgaagtcc-cagtactc 507

                                                                       
Query: 309 tgaaagtagaggcagaaggatcaggagtttgtggacactgtacctcacatagtgaggggc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgaaagtagaggcagaaggatcaggagtttgtggacactgtacctcacatagtgaggggc 567

                                                                       
Query: 369 tggagagcggttcagtgagccacagctgctcttgcagagaacctgggttcccttcccact 428
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggagagcagttcagtgggccacagctgctcttgcagagaacctgggttcccttcccact 627

                                                                       
Query: 429 gccacatcaatatacccacaaccacctgtaagtccagttccggaggatccgactccccct 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gccacatcaatatacccacaaccacctgtaagtccagttccggaggatccgactccccct 687

                                                                       
Query: 489 tctggcctccatgggcactatacttgtgtggtgacacaatcacacacacacacacacaca 548
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tctggcctcaatgggcactatacttgtgtggtgacacaatcacacacacacacacacaca 747

                                                                       
Query: 549 cacacacacacacacgtaaaaataaatgtataaagacaaacacaagtcagacatacagaa 608
           ||||           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cacat----------gtaaaaataaatgtataaagacaaacacaagtcagacatacagaa 797

                                                     
Query: 609 cataaagatgtgtgtgaagcccacccacacccctcagtctgt 650
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cataaagatgtgtgtgaagcccacccacacccctcagtctgt 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)