ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGAGTCCCTCTGGGAAATAGAAAGGAATCTATGGCTTTCAAGAACA
CCATCTCATGCCCACTTGTTTATAATGAATGGACTCAACATCAAACAAGA
GTTACAATATCTCTAGATGCTGGCGTCTATGATTTATCAAAAGTTAGAGT
GGTTTTGATTAATAACTTAGGAAATGAAAGGGGCATTTCTAAATGTTAGT
CTGCTTTAAATTTTATTGATCTTAATGTGCTTTATTCTATCTCATTTGTG
GATTTATCTTGAGCCAATGCCCAAGGCAGTGCCAGAGTGGATGTTGATGG
ATGTATCTGTTTTTATACCCCCCCCCCCCCCCCGCAGNGAGGTATCTAGA
GAGGAGAGATAGATTGTTTTCTCATGAACAACATGTGTTCTATGTTGCTA
TACATGGAGGAAGATCTGATCAGTATTGTCAGTTCAATCCAACGAGCTGA
GGACTAGCTATGTCATTTAATAGGGATTTACTTTAAATTTTCTTAAATTC
TAAACCACAAAGGAGTCCTCTATGCTTTTCTTTCTATCTTTCTGTTACTC
ATGGTCAGGAGTGGAATCAGGTGTGCCCAGGCTTTTGGCCTCTCACTCCA
GGAACTGAAAATTACGGCTACCACAGACTTGAAAAAGTATCAAGGAAGAT
TTCTTTGGAGTATAACAGCAATACAAACTGATAAGAAAGATATTTGAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACAACAGTGCTTTTATCAGAAAAC
TAAACTAATTAGATATCTGAACCCCCTGAAATGGAAATGAATGGAATATT
CACACAAATCCCATTACACTGGATGGTAGTTACTCAGGTTTCCTCCCCCC
ACCCCCCTATGTAAGGAAAGAGCGAGCACATCAGAGGCCATGGAAAATGC
TGCTTCCTGGCTCGCTCTACATGGCTAGCTCAGCCTGCCTTCTTTCACAC
CTCAGGACCACCGTCTCTGCTAGAACCACCAGAATCCAAACGGAGAACGG
ATGAACAGCTCTTTTTATTATACGCACAAATGTGAGAGTATAGGCTCAGC
TCAGTCTCCAGCACGGAGAAGGGACAGGACGAAGGAAAAGTTTTGTAGGA
TTACTGAAAAATGTTCAACTACATAAATACTAAAAACTACAAATAAAAAG
TATGTATTTTCTATAGTATTAATTGAGAGCAGTACTGCTTAGCGGATTGA
ATTACATGCAATCTGGCAAATTAGATTTTCTGGAGGCAATCTCACCACAT
TATTAAAAGATTTCAAAATTTATTTCCTTTTCCTCGACAGCTCTACTTTC
AGAGTTTACTCAAAAGAAATAGTAAGATTCACAAGGGTGCATGAATAATA
ATGAACACATTGCTTATAATATTT

Query= MSMg01no271_h04.b1 MSMg01no271_h04.b1 CHROMAT_FILE:
MSMg01no271_h04.b1 PHD_FILE: MSMg01no271_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:19 2005
         (319 letters)



>mm_chr17_50538941_50539659
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagagtccctctgggaaatagaaaggaatctatggctttcaagaacaccatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcagagtccctctgggaaatagaaaggaatctatggctttcaagaacaccatc 263

                                                                       
Query: 64  tcatgcccacttgtttataatgaatggactcaacatcaaacaagagttacaatatctcta 123
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 tcatgaccacttgtttataatgaatggactcaacatcaaacaggagttacaatatctcta 323

                                                                       
Query: 124 gatgctggcgtctatgatttatcaaaagttagagtggttttgattaataacttaggaaat 183
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatgctggcatctacgatttatcaaaagttagagtggttttgattaataacttaggaaat 383

                                                                       
Query: 184 gaaaggggcatttctaaatgttagtctgctttaaattttattgatcttaatgtgctttat 243
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 384 gaaaggggcatttctaaatgttagtctgctttaaattttattgatctcaacgtgctttat 443

                                                                       
Query: 244 tctatctcatttgtggatttatcttgagccaatgcccaaggcagtgccagagtggatgtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctatctcatttgtggatttatcttgagccaatgcccaaggcagtgccagagtggatgtt 503

                          
Query: 304 gatggatgtatctgt 318
           |||||||||||||||
Sbjct: 504 gatggatgtatctgt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no271_h04.g1 MSMg01no271_h04.g1 CHROMAT_FILE:
MSMg01no271_h04.g1 PHD_FILE: MSMg01no271_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:19 2005
         (288 letters)



>mm_chr17_50703797_50704484
          Length = 688

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacaacagtgcttttatcagaaaactaaactaattagatatctgaaccccctgaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct: 333 ctacaacagtgcttttatcagaaaactaaactaattagatatctgaagcagctgaaatgg 274

                                                                       
Query: 61  aaatgaatggaatattcacacaaatcccattacactggatggtagttactcaggtttcct 120
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 273 aaatgaatggaatattcacacaaatcccattgcactggatggtggttactcaggtttcct 214

                                                                       
Query: 121 ccccccacccccctatgtaaggaaagagcgagcacatcagaggccatggaaaatgctgct 180
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 213 ccccccacccccccatgtaaggaaagagcgagcgcatcagaggccatggaaaatgctgct 154

                                                                       
Query: 181 tcctggctcgctctacatggctagctcagcctgccttctttcacacctcaggaccaccgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tcctggctcgctctacatggctagctcagcctgccttctttcacacctcaggaccaccgt 94

                                                          
Query: 241 ctctgctagaaccaccagaatccaaacggagaacggatgaacagctc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ctctgctagaaccaccagaatccaaacggagaacggatgaacagctc 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)