BAC Information

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BAC

Clone NameMSMg01-271M16
Chromosome17 (Build37)
Map Location 30,056,284 - 30,056,392
singlet/doubletsinglet
Overlap genenone
Upstream genePxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
Downstream geneLOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271M16.T7 (MSMg01no271_m16.b1)MSMg01-271M16.TJ (MSMg01no271_m16.g1)
ACCAG411246AG411247
length752829
length of high quality
(start - end)
---109 (120 - 228)
definitionCHROMAT_FILE: MSMg01no271_m16.b1 PHD_FILE: MSMg01no271_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:45 2005CHROMAT_FILE: MSMg01no271_m16.g1 PHD_FILE: MSMg01no271_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGTTGGCATTATCCTTGTTCACTCGGCCT
TCAGTTCACAGTTCCCCTTCTTGGACTCCGGCCACTTGGCTGCTGGTGGC
AGGCAGGGAGACCCAAGTCAGGGGAGGGGGGCGGGGAGAAGGTCTTTGTG
TGGAGAGGTAGGGTGAAGTCGTGAGTGGGAGAGGGCGACTCTTCCTTCTT
TTTGGGCATTCCGCGTAATGTTACCTTGTTCCTTTCTTCCTCCTACCGGT
TTATTTCATTCGCGTTTTTTTTTTTTTCGGTCTTACTCTTCTTCATTACG
GATTTTTAGTAATTCCCCCCCCCCCCCCCCCCTATGTTTGTTTTTATTTA
ATTGTGTCCCNCCCCCCCCATTAAAAAAAAAAAAATTCCCGCGGGCGGGG
CGGCACCCCCTTTTTCTTTCTTATCCCTCCCCACCCTTTTTTTCCTTACC
CCCCCCTCCCCCCCCCCCCTTTATTCCCCCCCCTCCCCTTTGTTTTTTTT
CCCTTTCCATCCATTGCCCCTTCCTTTTCCCTTTCCCCCCTTTTTCTCCC
CTGCGCCCCCTTTATTTCCCGTTCCGCCCTTTTCTCCCCCTCTTCCCTTC
CCTTATCCCTCCTTTCCCTTTCCATTATCTTCCCCGCTACCCCTTTCCTC
CCTTTTTTTTTCTTATTTTCCCTTTGCTATCGCCTTTCTTTATTTCCCAT
TATCCCCCTCTTCCCTCCTTTTCTCCTCCCTTTATTATTCCCTCTCCCCC
CCCCCCCTATATCTCCCCTTTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_m16.g1 MSMg01no271_m16.g1 CHROMAT_FILE:
MSMg01no271_m16.g1 PHD_FILE: MSMg01no271_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:45 2005
         (109 letters)



>mm_chr17_30056084_30056592
          Length = 509

 Score =  203 bits (105), Expect = 2e-57
 Identities = 108/109 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggactccggccacttggctgctggtggcaggcagggagacccaagtcaggggagggg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 309 cttggactccggccacttggctgctggtggcaggcagggaggcccaagtcaggggagggg 250

                                                            
Query: 61  ggcggggagaaggtctttgtgtggagaggtagggtgaagtcgtgagtgg 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggcggggagaaggtctttgtgtggagaggtagggtgaagtcgtgagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)