BAC Information

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BAC

Clone NameMSMg01-272B14
Chromosome17 (Build37)
Map Location 40,941,067 - 40,941,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2
Downstream geneRhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272B14.T7 (MSMg01no272_b14.b1)MSMg01-272B14.TJ (MSMg01no272_b14.g1)
ACCAG411474AG411475
length755753
length of high quality
(start - end)
654 (64 - 717)291 (67 - 357)
definitionCHROMAT_FILE: MSMg01no272_b14.b1 PHD_FILE: MSMg01no272_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:09 2005CHROMAT_FILE: MSMg01no272_b14.g1 PHD_FILE: MSMg01no272_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAACCGCGGAATTCTTTG
TTCTTTCCTGAGACCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGA
ATATTTCCCCTGTGTCCTTATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCCGGCTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCAACATTTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTC
TGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAA
AGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTATCCTTGAG
AAGACTTTTTGCTATCCCTAGGTTTTTGTTATTCCAGACAAATTTGCAAA
TTGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGACCCACAGTTTGCAGAATTTAAGGAGTCCC
TCTGCAAATGCTGTAGTGACATAACATTGCATGCTTTAGTGGAACTTCTC
TTCCTGTTTTTGGCATTTGTTTGATTGTGTGAATTTTTTTCTGTATCCTT
CCAAAAAAAATCCTACCTCTTCCTCAGAGAGGACATAGAGTCTGTAGTTA
GTGACTGATGCTCCGATGTGATATCATCTTCCTTGCACCATTCTTTGACT
TGCTATTTACCCACAGGATTGCTGAGAGCTTCCCAGGTACTGACAGAAAG
ATCCATTATTTTTTGCCTNTCCGCCCCATTTGGAGAGATGCCCAGACTCA
GTGCAGCACTTCTTGCACTGAGAAAACTACCAGGGATTAGAGGACCTGAC
ATTGAACTCAGAATGTTTTTTGTAAGTGAGAACCACGAGATTATATCCAC
ACAGACATTATTTCTGGGGTTAAAAAAAAAGAAATTGCAATCATCCATCC
TTTCTCGATCTTACACTGTTTCCATTCTCTAGAGTTCAAGACCATGTATA
TAGGTTTCTAGCTCTATAATGGTGTCAAGTATGAGTTTCATCTTGTGAAC
GGACTTTAAATTCAATTAGAAAATACTTGATTACTTCCATGATGCTCATG
CTGCTATTACACCAGTGGGCATATCTTGAGTTTGGTGAGTACAGAAAGTT
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_b14.g1 MSMg01no272_b14.g1 CHROMAT_FILE:
MSMg01no272_b14.g1 PHD_FILE: MSMg01no272_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:09 2005
         (291 letters)



>mm_chr17_40940867_40941558
          Length = 692

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgacccacagtttgcagaatttaaggagtccctctgcaaatgctgtagtgacataaca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 491 tttgacccacagtttgcagaatttaaggagtctctctgcaaatgctgtagtgacataaca 432

                                                                       
Query: 61  ttgcatgctttagtggaacttctcttcctgtttttggcatttgtttgattgtgtgaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgcatgctttagtggaacttctcttcctgtttttggcatttgtttgattgtgtgaattt 372

                                                                       
Query: 121 ttttctgtatccttcc-aaaaaaaatcctacctcttcctcagagaggacatagagtctgt 179
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 371 ttttctgtatccttccaaaaaaaaatcctacctcttcctcagagaggacatagagtctat 312

                                                                       
Query: 180 agttagtgactgatgctccgatgtgatatcatcttccttgcaccattctttgacttgcta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agttagtgactgatgctccgatgtgatatcatcttccttgcaccattctttgacttgcta 252

                                                              
Query: 240 tttacccacaggattgctgagagcttcccaggtactgacagaaagatccat 290
           |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttatccacaggattgctgagagcttcccaggtactgacagaaagatccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)