BAC Information

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BAC

Clone NameMSMg01-272I09
Chromosome17 (Build37)
Map Location 20,181,041 - 20,181,259
singlet/doubletsinglet
Overlap geneV2r7
Upstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664
Downstream geneLOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272I09.T7 (MSMg01no272_i09.b1)MSMg01-272I09.TJ (MSMg01no272_i09.g1)
ACCAG411782AG411783
length736735
length of high quality
(start - end)
317 (46 - 362)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no272_i09.b1 PHD_FILE: MSMg01no272_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:42 2005CHROMAT_FILE: MSMg01no272_i09.g1 PHD_FILE: MSMg01no272_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGTTTGTTGCCTTCAAGGATTTTCTGGGACCTTGGAACATTGG
TGAAGTCTTAGCTATGTCAGAATTCAATCTTTAAAGGCACTTATAATAAA
AAAAATACTAAAAAGGAGCACATGGATCCATGCAGCAAACTGACACGGGG
ATAGGGTATGAGTATACGGGTTATGAGAAAACTAAAGTTCCAGGAGGTGA
GGTTTATTGAAACTCTTTGCCTTGTGAGTGTGCCCAGGCCTGCCAAGCAA
ACTTCACTGGACCATGCGTAGCAAATCACCATGGCTGTTTTCAAGCTGTA
CTAAAGAGCAATTGTTATTAACCCTGCCCGCCACTGGTACAGTGACAGAT
AGGTAGACCAATGGAATACAATTGAAGACCCAGAAATGAACCCACACACC
TATGGTCACTTGATCTTTGGCAAGGGTGCTAAAACCATCCAGTGCAAACA
AGAAAGCATTTTCAATAAATGGTGCTGGCACAACTGGTGGTTATCATGTA
GAAGAATAAGAATTGATCCATTCTTATCTCCTTGTACTAAGGTCAAATCT
AAGTGGATCAAGGAACTCCACATAAAACTAGAGACAGTGAAACTAATAGA
TGAGAAAGTGGTGAAAAGTCTTGAAGATATGGTCACAGGGAGAATATTCC
TGAACAGAATAGCAATGGCTTGTGCTGCAAGATCGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTCCCCAAGGTTATTATTA
ACATCTAGTTGTTAGTTTCTTTCCCACTGCTTTTGACCTAAATAGTTAAG
CAGTGGTGGAGAAGAAAAATATATACAGTGAAACCTTAATGAAGTCTTTT
TGTTTTCTGTGTTCAACTCACTTTGACTGAGAAATTCAGTACAAGTCTTT
TGTCGGTGTGGATTTGGTGCCTTACCAATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATTTTTTTTTACCCCCCCCCCCCCCTTATAGTATGTGAC
ACCGTGTGTGAGACACTGACCACAAAAAAAAAAAAAAAATAGGAGTGTGT
GTCTGTTTCCCTTTTGCTTTCTAGCCTATATATATATTTCAATTTCTGTG
TGTTTGAGGCTTACAGATATATGTATTTACGAACTTTGTCGCATATACGT
TTCCTGAGTCTACTTTTATAGCGTTATCCATATATACATGCCTATGTGCT
TGTGAGTGTGATTTCCCTGCTAAAGAGAGCGTTTCGATATGTTATATATA
TATACATCCCCTTTTTTATTTTGTCCTTTTTCTTCCCCCGCTTTTTCTCT
TCCTTCCTTCAGATCTACTTCCCCCTTTGTACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_i09.g1 MSMg01no272_i09.g1 CHROMAT_FILE:
MSMg01no272_i09.g1 PHD_FILE: MSMg01no272_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:42 2005
         (290 letters)



>mm_chr17_20180859_20181548
          Length = 690

 Score =  424 bits (219), Expect = e-123
 Identities = 219/219 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtttccccaaggttattattaacatctagttgttagtttctttcccactgcttttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 attgtttccccaaggttattattaacatctagttgttagtttctttcccactgcttttga 342

                                                                       
Query: 61  cctaaatagttaagcagtggtggagaagaaaaatatatacagtgaaaccttaatgaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cctaaatagttaagcagtggtggagaagaaaaatatatacagtgaaaccttaatgaagtc 282

                                                                       
Query: 121 tttttgttttctgtgttcaactcactttgactgagaaattcagtacaagtcttttgtcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tttttgttttctgtgttcaactcactttgactgagaaattcagtacaagtcttttgtcgg 222

                                                  
Query: 181 tgtggatttggtgccttaccaatatatatatatatatat 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgtggatttggtgccttaccaatatatatatatatatat 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)