BAC Information

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BAC

Clone NameMSMg01-272L02
Chromosome17 (Build37)
Map Location 59,950,509 - 59,950,788
singlet/doubletsinglet
Overlap genenone
Upstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272L02.T7 (MSMg01no272_l02.b1)MSMg01-272L02.TJ (MSMg01no272_l02.g1)
ACCAG411906AG411907
length750755
length of high quality
(start - end)
270 (435 - 704)280 (383 - 662)
definitionCHROMAT_FILE: MSMg01no272_l02.b1 PHD_FILE: MSMg01no272_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:54 2005CHROMAT_FILE: MSMg01no272_l02.g1 PHD_FILE: MSMg01no272_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACTCCGCGGAATTCTTGCC
TTGATTTCATAAAATGATGGACTAAACGGTATAAGATGAAAGAAACCCTT
TCCTCCTCAGGTTGCTTCTGGTTGTGCTGTTTATTATCATAATAGAAACT
CTAATTTGTATTTGTGTGCTAATATTCTAAAGTTATTGTGCTACTGTGAC
AAACAATGTGATCCAAAAAAGAACTTAAGGTGGAAAGAATTTATTCATTT
TTCCAATTATAGTTGGTCATTGAGAAATGCCAGGGCATGGATTCAGGCAG
GTACTTGAATGCAGGCTTGTTTTTTTACTTCTGACCAAGAAACTCATTCA
TAGCTAATTAGTTATTTCCCCCCCCCCCCACTGCAAAACACTTTTATATG
GCTTACATACCAGTTTATACTCAACTAAATATCAGTAGACAGTGCAAGAC
CACCTATCTGACCAGGAAATGGTGTTGCTCACACTGCCCTAGGCCATTCT
CTATCAAATAACAACCAGGCAGTGCTACAGACTTGCCCACAGGCAAATCC
AATCTGGACAATCACTCATTTCTATTGTGAAATGACTCAAAGCTACGTTA
AATTGACAGCTAAAGTTTGTCCCATTTCCTCGCTCCTTTGCACTCATACG
CCAGTTATACAGTTTTCTGTGATGGTCTCACAGCATTCCCCAACTTCTTC
TCTTTCCGAACCTCAGGGATCTTGTCTGCTGATCTCTAATCCGTTTTGTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTGTACCAATGCATACTCATTTTCATTTTTA
ATTCCTAGTTCATAGCTTGGGAGATCAAAGAACTAGATGTGTGCAAAATA
AAGGTATGAAACCTGTGTATCAGCAAACATATTTAATGTAATCTTTACAA
AGGTACAATAGAGAGAAAAACGTTTCTTTTTTGAGATCCCATATATGCTA
TTTTTGAAGAAAATGATTATATTAGTGACATTATTTTATTAACAAAACTG
TTACTGCAAGGCTTAGCATTTCACTGGTTGGTTCTCAGAGGCAAATGATT
GATTTATACTTATTTGTCTGAACCTCCACACATAGCCACTCTGCTTTACA
TTTTAAAAGAACCGCATCACTGGTGAATTGCATTAAATGGACCCGAAATC
TATAGAAGTTGAAAGTGTTCCTGACTCCTGTACTGGAACAAATAATAATG
AAAGGACAGAGGAAGAAGCAAGCATGGGTATGAATAATCAAGAAATCATT
GCACGTGGGCCAAGAAGAAAACACAAGGATCTACCTCTTCTAGTAAAATG
TAAGAATCCTTACATTTCACTCTCCATTCATTTATGGCAAACTTTTATAG
GATATTTAATTTCATAGCAATTTCAGAGGAAGACAAAAATTTCTCATCAA
CTTCCTATCTTCATAAATCATCACCTCTACTATTTTACACGGGGTAGAGC
ATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_l02.g1 MSMg01no272_l02.g1 CHROMAT_FILE:
MSMg01no272_l02.g1 PHD_FILE: MSMg01no272_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:54 2005
         (280 letters)



>mm_chr17_59950309_59950988
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagccactctgctttacattttaaaagaaccgcatcactggtgaattgcattaaatggac 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tagccagtctgctttacattttaaaagaaccgcatcactggtgaattgcattaaatggac 421

                                                                       
Query: 61  ccgaaatctatagaagttgaaagtgttcctgactcctgtactggaacaaataataatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccgaaatctatagaagttgaaagtgttcctgactcctgtactggaacaaataataatgaa 361

                                                                       
Query: 121 aggacagaggaagaagcaagcatgggtatgaataatcaagaaatcattgcacgtgggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggacagaggaagaagcaagcatgggtatgaataatcaagaaatcattgcacgtgggcca 301

                                                                       
Query: 181 agaagaaaacacaaggatctacctcttctagtaaaatgtaagaatccttacatttcactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaagaaaacacaaggatctacctcttctagtaaaatgtaagaatccttacatttcactc 241

                                                   
Query: 241 tccattcatttatggcaaacttttataggatatttaattt 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tccattcatttatggcaaacttttataggatatttaattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)