BAC Information

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BAC

Clone NameMSMg01-272M08
Chromosome17 (Build37)
Map Location 82,859,024 - 82,859,314
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141
Downstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226, Eml4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272M08.T7 (MSMg01no272_m08.b1)MSMg01-272M08.TJ (MSMg01no272_m08.g1)
ACCAG411960AG411961
length752745
length of high quality
(start - end)
319 (46 - 364)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no272_m08.b1 PHD_FILE: MSMg01no272_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:00 2005CHROMAT_FILE: MSMg01no272_m08.g1 PHD_FILE: MSMg01no272_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATAGCCCGTATACTCAAACTCTATCCCCGTGTTAGTCTGGTGT
ATGGATCCACGTGCTCTCTTTCACTATTGTTTTATTATAAGTGCCTTTAA
GGCTTGATTTCTTGACAAGCTAAGCCTTCGCCAGTGTTCCAATGTCCTAG
AAAATCCTTGAAGCCTTCGAGCTTGGAATTCAGTAGGAATTCAGTAACAA
TGTTACCTACTCAGTAACATTCAAAATCACTTCTAGCAGAGACTGTGAAA
CTAATTAGGCATTATAAAGAATGTAGCTAGAATAGCTCAAGGCTGGTCTG
CAGAGTGATTATTTTTTACAGCCACCCCGACCCTCACCCAAACAAGGGAA
TACTTCACTAGGCCCAAAGGAACAGCATAATCAAGCATTTACTAGGAACC
CCTGGTGGTGAGCTCAACAATAGACTAGCATTACACCTGGCTCCCTTCTT
AGTGGTAAACAGAGGCCTGGTTCCCGCCATCTTTTGATGTATACATTCCT
TTTGTTTTGTGTCACTGCAACTCAGTGGATGTGTCCCGCCTGGCTTTTCT
TGTTTTTTTTTCCTCAGTATAAAAAAACTCTGGTGTCCGCAAATTCTTCC
ATGTTTGTTTTCGTTTCCTCTTCTAAAGAACATTAAAATAGTCCTTCCCT
TATTTCCTCATTTTTTCTCGTATCATTATGTTCTCCACCACACCTCTATT
CT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGTTTCATCAAACTTTTGTCC
TCATTAAGATCGTGTTTCCAGTTGTTCCCACCCTCACTGATGCTTTTCAA
GCTCTGGATGCTCCCATTATATGCTCAGTCATCTGGTCTACCCCTCCCCC
CTATATACTGCTGAGCAAAACTTCCTTGTTATTCATTCTCCTTTTGTCTT
TACAGTAGTGATTTCAAGAATAAGTAAGCCATCTAGATAAAAATGGCTCA
AGTTCTTTTAGGAGAGAAGCCAGAGTAACTTTCCTAAGGAAGTAACACAG
GTGTGTGCTCACCTGTCTTTTTTCTCCGCCCCCGCTTGTGCTATCGAAGG
TGGAGCTGGCAATTGTACAACCGTTAGGCTAGTGATCTTCGCTTAAACAT
ATCATGGCCTTTGGAGTTTTGGCAGCATGATGTTTCTAAAATTTTCAAAC
TAGGTATATGGTCTGTGTTATAAATAAACATTTTATAAGCAATTTAAACT
CAACATATGGAAAATAATTAATACCAAGTTGCAATACATAGTGTCATAGC
ATTATATGATATTTTTATATTCTAGTTTGTCCTGCACTTTTTATTCAAAT
AACTTTTATAATGTGTGTTGCTACCAACCATTGTTATCACAGGTTCTGCG
CCTGCACTGTATTAATTACAGTTTTGAGCGCCATATATGCACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_m08.g1 MSMg01no272_m08.g1 CHROMAT_FILE:
MSMg01no272_m08.g1 PHD_FILE: MSMg01no272_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:00 2005
         (291 letters)



>mm_chr17_82858824_82859514
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggtttcatcaaacttttgtcctcattaagatcgtgtttccagttgttcccaccctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catggtttcatcaaacttttgtcctcattaagatcgtgtttccagttgttcccaccctca 432

                                                                       
Query: 61  ctgatgcttttcaagctctggatgctcccattatatgctcagtcatctggtctacccctc 120
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgatgcttttcaagctctggatgcccccattatatgctcagtcatctggtctacccctc 372

                                                                       
Query: 121 ccccctatatactgctgagcaaaacttccttgttattcattctccttttgtctttacagt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 ccccctatatactgctgagcaaaacttccttgctattcattctccttttgtctttacagt 312

                                                                       
Query: 181 agtgatttcaagaataagtaagccatctagataaaaatggctcaagttcttttaggagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 311 agtgatttcaagaataagtaagccatctagataaaaatggctcaagttcttttaggatag 252

                                                              
Query: 241 aagccagagtaactttcctaaggaagtaacacaggtgtgtgctcacctgtc 291
           |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 251 aagccagagtaactttcctaaggaagtaacacagatgtgtgctcacctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)