BAC Information

Click to search

BAC

Clone NameMSMg01-273N07
Chromosome17 (Build37)
Map Location 33,046,210 - 33,046,729
singlet/doubletsinglet
Overlap geneCyp4f14
Upstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107
Downstream geneCyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N07.T7 (MSMg01no273_n07.b1)MSMg01-273N07.TJ (MSMg01no273_n07.g1)
ACCAG412728AG412729
length731733
length of high quality
(start - end)		529 (69 - 597)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no273_n07.b1 PHD_FILE: MSMg01no273_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:16 2005CHROMAT_FILE: MSMg01no273_n07.g1 PHD_FILE: MSMg01no273_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGCACCATGCCGCAAGCCTTACGGAAGCGCATACCATCAGGGGTGAGA
TTATACAGCAGGTCCATGAACATCAAAGGCTGCTGGTGCCTTTTGGCCAC
TAGGGCACTGAGCTCCAGGATGGCAGCAATATATTCACTGGACTTCCTGC
AGGATTTAGGAGACAGCAATTTAACATATATGAATCCTGTGCCTCTTCCC
ACCAGCCAGGAGTCATTGGGAATGGAGTATCAGAAGCAGCTGGACACAGA
GGCAGAGTAGAATGAGCCCTGAAAGTCAACTCTCAAAAAACCCTCATCAT
ATCTCTGTGAGCTGCCTCCACACCCCTATGCTCCCAGACTGCAGTGTGGT
CAGCTCTCAATATTGATTTGCCGCCGGGCAGTGGTGGCGCACGCCTTTAA
TCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAG
CCTGGTCTACAGAGTGCGTTCCAGGACAGCCAGGACTGCACAGAGAAACT
CTGTCTTGAAAAACCAAAAAAAAATATATATATATATATTGATTTGCCAT
GAAGTTGTGAAGACACTAGATGAGTTGACAGAAGAAATGGTGACACTAGT
AGGCAAGCTTAACCCTGATACCTTCTGGAAAAAATGACGCCCAAGCTGTG
TGGAGGCAGGGAAGTTTAGATTCCATAACGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCATGATTTCGAAGGGAAGTACGAGTAGT
GACAGCTTTATTACACAGGCCACAAACATAGAGTTTCTCTCCAGTGTGAG
TCCGTTCGTGTACTCGACAGGTACTTGAAGAAATGAAACATTTGCCACAG
TATTTGCATACATAGGGTTTCTCTCCACTGTGAATTCTTTCATGGCGTGG
AAGTGAACTTTGACCAGTGAAAGCTTTCCCACAATACTTACATACAAAGG
GTTTCTCTCCGCTGTGAATCCTGTCATGACGTCGAAGGGAACCACGACTA
GGGAAGGCTTTTTTTTTTGCCTCACCACCCAGGGTTTCTCACCGGTATGA
GTTCTTTCATGTCTTCGAACCTTACTTGAAGAACAAAAGGCTTTCCCACA
TTGATGACATTTATACGGTTTCTCAATGGTGTGGGTATTTCCATGTTTCA
GATAGCACTCAGGATACATGAAGGTTTTCCCACACTCCCTAAATTTATAG
AGACTGGCTTCATATACCTCATATTCATATCGTTTATGTCCTGGTTGAAG
AGGAATATGCATATTTAGGGGTGGAAGACCAATAAGTATGTCCTCCGCAT
AAATTACTTTCACACCGTTTTACTCCATGAAAGGTTTTTCTTGTTCCGTA
AAGTATCTGGAAACTCACTGACGATTCCGCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n07.b1 MSMg01no273_n07.b1 CHROMAT_FILE:
MSMg01no273_n07.b1 PHD_FILE: MSMg01no273_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:16 2005
         (529 letters)



>mm_chr17_33046010_33046938
          Length = 929

 Score =  988 bits (511), Expect = 0.0
 Identities = 520/527 (98%), Gaps = 7/527 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttacggaagcgcataccatcaggggtgagattatacagcaggtccatgaacatcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttacggaagcgcataccatcaggggtgagattatacagcaggtccatgaacatcaaag 260

                                                                       
Query: 61  gctgctggtgccttttggccactagggcactgagctccaggatggcagcaatatattcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgctggtgccttttggccactagggcactgagctccaggatggcagcaatatattcac 320

                                                                       
Query: 121 tggacttcctgcaggatttaggagacagcaatttaacatatatgaatcctgtgcctcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacttcctgcaggatttaggagacagcaatttaacatatatgaatcctgtgcctcttc 380

                                                                       
Query: 181 ccaccagccaggagtcattgggaatggagtatcagaagcagctggacacagaggcagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccagccaggagtcattgggaatggagtatcagaagcagctggacacagaggcagagt 440

                                                                       
Query: 241 agaatgagccctgaaagtcaactctcaaaaaaccctcatcatatctctgtgagctgcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatgagccctgaaagtcaactctcaaaaaaccctcatcatatctctgtgagctgcctc 500

                                                                       
Query: 301 cacacccctatgctcccagactgcagtgtggtcagctctcaatattgatttgccgccggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacacccctatgctcccagactgcagtgtggtcagctctcaatattgatttgccgccggg 560

                                                                       
Query: 361 cagtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctga 620

                                                                       
Query: 421 gttcaaggccagcctggtctacagagtgcgttccaggacagccaggactgcacagagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcaaggccagcctggtctacagagtgcgttccaggacagccaggactgcacagagaaa 680

                                                          
Query: 481 ctctgtcttgaaaaaccaaaaaaaaatatatatatatatattgattt 527
           |||||||||||||||||||||       |||||||||||||||||||
Sbjct: 681 ctctgtcttgaaaaaccaaaa-------tatatatatatattgattt 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |