BAC Information

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BAC

Clone NameMSMg01-273O18
Chromosome17 (Build37)
Map Location 27,214,738 - 27,362,674
singlet/doubletdoublet
Overlap geneItpr3, 2900010M23Rik, Ihpk3, Lemd2
Upstream geneDecr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1
Downstream geneLOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273O18.T7 (MSMg01no273_o18.b1)MSMg01-273O18.TJ (MSMg01no273_o18.g1)
ACCAG412796AG412797
length742742
length of high quality
(start - end)		318 (34 - 351)288 (65 - 352)
definitionCHROMAT_FILE: MSMg01no273_o18.b1 PHD_FILE: MSMg01no273_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:23 2005CHROMAT_FILE: MSMg01no273_o18.g1 PHD_FILE: MSMg01no273_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,362,363 - 27,362,674)(27,214,738 - 27,215,025)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGCTCC
ACTTGACCTAGATTAGAATGTGGTTGCTCCCAACTCCAGGTGTCTACTTC
CAGCTCTGCAAGGAATATTGAGGAATCTGAGTGCGCAGCTTGGCAGTCCC
TTGCAGGAGGCTTGCACATTTAGTTCTCACCAGCTTTCTGAGAACCCCAC
CTTTAAGGACTGGTCATTTTTCATTTTTATGCCTTCAGCTCAGACGTGTC
TAGAAATCCTGGGTTCTTTTAAGCTCCACTTCTCTCTAGCCATGGTCCTC
TGCGTCTTTGAGGGAAACATCCAGAAAATGAGGCAGTATTTGAGCAGTCN
CTTCNCTCGCCAGNTCTNACCACCTATCTCCTGGCCTTTCCATCCTCTCC
CATGTCCTGTGTCCTGAAAAAACAGAGTGACCTAAGTCCAGCCATTCACT
GAGAAGGTTTTCAGATCATAGCTCTAACCCCTTGACACCTCCCTGTGTTC
GGTGTCTGCCCTCCCCGATTTAGTATCATTTGCAAATTTAATTAACTTGT
CTTTGCCGCCTCATTCCAGGCCCCTAATGAAGATGTTCTGGAAGTGTGTG
GCAAACAATATTTCCAAGGTCACTAGGTTAAGAGCATTAAGTGGCTAATA
GTTCTGCCCATTATGGGGAGAGAGAGGCCATCAAGTGTCCACATGCGATC
TGAGCCGTTTCCTTGAGCTCTGTGGCTTCCTCTCGAAGGCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACGGCTGCATAGCTGCTTGCCTGACATTTGTGAGA
CCCTGGGTTCAACTCCTACAAGTTCATCCTCTCCTCTTAAATATTTACTT
TATTACTACTGTTATTGGCTTATTTATTTAATTTTTATGAGACAGAGTCT
CATTATGTAGTCTTGGCTGGCCTGGAACTTTCTACGTAAACCAGGCTGGC
TTTAACTCACAGAGAGCCACGGGCCTCTCCTGCCATGTGCTGGGATTTAA
GTGTGTGCTTCTATGGCTTTGCTTTTGTCTATGAGGCAAAACTCCATGCA
TGTCTTTTTACTATCCCCCCGCAGTCCCCTTGGAGGCCAGAAGAGGGCGC
CAGAGCACCCGGAACTGAGAATCCAGATTGAGACTCAGTCCTAGAGTCCC
CGCAAGAGCAGCCAGAGCTCATAACTGCCGAGCCATCTCTCCAGGCTCTG
TTTTCTCTTTTTCATTTAAAAATTCCTTTTTAAAAATGTGTCCCATTTCT
TGGAAAATGATGTGAATATTAGTGTTTTTTAAAATTCCATGGTTTTAATT
ATTTAGAAAAAATTACTTATTTTTTAATTGTGGTGAAATATACTTAACAA
AACACTCTTCCTCGCTGGGGTTGGAGAGATGGCTATGCAGTTAAGAGCAC
TGGCTGCTCTACCAAGGTCCGGATTTTGTTTTCTAGCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_o18.b1 MSMg01no273_o18.b1 CHROMAT_FILE:
MSMg01no273_o18.b1 PHD_FILE: MSMg01no273_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:23 2005
         (318 letters)



>mm_chr17_27362159_27362876
          Length = 718

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgctccacttgacctagattagaatgtggttgctcccaactccaggtgtctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcttgctccacttgacctagattagaatgtggttgctcccaactccaggtgtctac 457

                                                                       
Query: 65  ttccagctctgcaaggaatattgaggaatctgagtgcgcagcttggcagtcccttgcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttccagctctgcaaggaatattgaggaatctgagtgcgcagcttggcagtcccttgcagg 397

                                                                       
Query: 125 aggcttgcacatttagttctcaccagctttctgagaaccccacctttaaggactggtcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aggcttgcacatttagttctcaccagctttctgagaaccccacctttaaggactggtcat 337

                                                                       
Query: 185 ttttcatttttatgccttcagctcagacgtgtctagaaatcctgggttcttttaagctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttttcatttttatgccttcagctcagacgtgtctagaaatcctgggttcttttaagctcc 277

                                                                       
Query: 245 acttctctctagccatggtcctctgcgtctttgagggaaacatccagaaaatgaggcagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acttctctctagccatggtcctctgcgtctttgagggaaacatccagaaaatgaggcagt 217

                       
Query: 305 atttgagcagtc 316
           ||||||||||||
Sbjct: 216 atttgagcagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_o18.g1 MSMg01no273_o18.g1 CHROMAT_FILE:
MSMg01no273_o18.g1 PHD_FILE: MSMg01no273_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:23 2005
         (288 letters)



>mm_chr17_27214538_27215225
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacggctgcatagctgcttgcctgacatttgtgagaccctgggttcaactcctacaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacggctgcatagctgcttgcctgacatttgtgagaccctgggttcaactcctacaagtt 260

                                                                       
Query: 61  catcctctcctcttaaatatttactttattactactgttattggcttatttatttaattt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 catcctctcctcttaaatatttactttattactactgttattggcttatttacttaattt 320

                                                                       
Query: 121 ttatgagacagagtctcattatgtagtcttggctggcctggaactttctacgtaaaccag 180
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttatgagacagaatctcattatgtagtcttggctggcctggaactttctatgtaaaccag 380

                                                                       
Query: 181 gctggctttaactcacagagagccacgggcctctcctgccatgtgctgggatttaagtgt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gctggctttaactcacagagagccacgggcctctcctgccacgtgctgggatttaagtgt 440

                                                           
Query: 241 gtgcttctatggctttgcttttgtctatgaggcaaaactccatgcatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcttctatggctttgcttttgtctatgaggcaaaactccatgcatg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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