BAC Information

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BAC

Clone NameMSMg01-274F21
Chromosome17 (Build37)
Map Location 16,109,288 - 16,109,523
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274F21.T7 (MSMg01no274_f21.b1)MSMg01-274F21.TJ (MSMg01no274_f21.g1)
ACCAG413114AG413115
length721735
length of high quality
(start - end)
64 (238 - 301)239 (124 - 362)
definitionCHROMAT_FILE: MSMg01no274_f21.b1 PHD_FILE: MSMg01no274_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:53 2005CHROMAT_FILE: MSMg01no274_f21.g1 PHD_FILE: MSMg01no274_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCAAACGACTCACANATTCGAAGCCGNCGGAANCNNNGNNCT
TANCGNGACGGGGGNNNANGGGGNANNNGANNNNCNGAAGNCCCCNNCTT
GTTNCCCCAAAAAAGGGGAGANAGNCCCCNANCGGAANNAGGANAGGNAA
AGAACCNNNCCCAANCGGNNGGNGGNCNNNNNGNCCNANNGACGGNGNCN
NNNGCCNNGCAGAAACNNNGGAGNNNCANNAGGTCTTTTTTGTCAATTCT
CGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGAATCTTTCCCCTG
TTTATGTATCTTCAAGGCNNNNCCCCACNNNCNCCNCNANAAGTTTTATT
GCCCCCGCCCTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGT
ACAAGGAGATAAATATGGATCGATTCGCATTCTTCTACATGATAACAACC
AGTTGCGCCAGCACCAATTGTTGAAAACGCTGTCTTTCTTCCACTGGATG
GTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCAT
TTCTGGGTCTTCAATTCTATTCTATTGGCCTACTTGTCTGTCTCTATACC
AGTACCATGTCAGCTTTATCACAACTGCCCTGCACCATTTCTTTTTTTTT
ACGCATGGCGACTCCACCAGAGGTTCTTCTAACCTTGCATATAACCTTTC
GCTATCCTACGCTTTTTGCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTAGCATATTCAAGCAGCACCAGAAGATTA
AACAGGCTTCCATCTCAGCTCATTACCAGCTACATATGCTTCTTGAGTGT
TTATTTAATTCAAATTTTAATGCTTACTTATGACAAAAAGCTTATTATGA
TACTGTATAATTATGTAGTAATACTTCAGTGATTCCTGTAGATCCTTGAT
TAATTCATTTTTGTGCATTTCTTATCCTTCATCTAAAGTTCTAGTTTTCC
TTAGAGATGAGTTATCTTTCGTTTAATGACAACAGAAATTGAAAGTAGAG
GGCGTTTTGCTTTGTGTTGACTCCCCTGCCTACAATAAACAGGGTAACTG
GTAATTCCAAGAACCTTACACTTATTTTGAGAATACTGTTTCTTAATTCT
TTAGAAATAAAGACAAAAACCTCTTTCCTCAGAAATGAATTCATGANNTC
TCACAGNCAATAAAATCTTTCCTCCTGAGGTTTTGATGTATGAGCTGCGT
TTATAGACGAAAAACCGGGNNNNNNNTATTTTCNNNNCTTTACTAAAAAT
ATCNGNNNNNNNNTNTTTTTTTCTTCCGGCCCCGTCCCCCCNTNNNTNTT
TTTCCTTTCTTAAAAAATGATTTNNNNNNNNNNNNNNNNNNNNNTANGNA
GGGNTTTAAAAACACCTAAAAAANNNAGAAANNAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_f21.g1 MSMg01no274_f21.g1 CHROMAT_FILE:
MSMg01no274_f21.g1 PHD_FILE: MSMg01no274_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:53 2005
         (239 letters)



>mm_chr17_16109088_16109726
          Length = 639

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccagctacatatgcttcttgagtgtttatttaattcaaattttaatgcttacttatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccagctacatatgcttcttgagtgtttatttaattcaaattttaatgcttacttatga 260

                                                                       
Query: 61  caaaaagcttattatgatactgtataattatgtagtaatacttcagtgattcctgtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaagcttattatgatactgtataattatgtagtaatacttcagtgattcctgtagat 320

                                                                       
Query: 121 ccttgattaattcatttttgtgcatttcttatccttcatctaaagttctagttttcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgattaattcatttttgtgcatttcttatccttcatctaaagttctagttttcctta 380

                                                                   
Query: 181 gagatgagttatctttcgtttaatgacaacagaaattgaaagtagagggcgttttg 236
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gagatgagttatctttcgtttaatgacaacagaaattgaaagtagagggcattttg 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)