BAC Information

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BAC

Clone NameMSMg01-274G17
Chromosome17 (Build37)
Map Location 22,673,276 - 22,673,958
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik
Downstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274G17.T7 (MSMg01no274_g17.b1)MSMg01-274G17.TJ (MSMg01no274_g17.g1)
ACCAG413151AG413152
length745746
length of high quality
(start - end)		681 (65 - 745)676 (69 - 744)
definitionCHROMAT_FILE: MSMg01no274_g17.b1 PHD_FILE: MSMg01no274_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:57 2005CHROMAT_FILE: MSMg01no274_g17.g1 PHD_FILE: MSMg01no274_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCCTATCCCTAACGAATGGCTGAGATGCACCTGAAAAAATGTTCAGCAT
CCTTAATCATTAGTGCCCTACAAATCAAAACAACTCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCGAAAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGGGGAACAGTCCTCCATTATTGGTGGGATTGCA
AGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAACTG
GACATAGTACTACCAGAGGATTCCACAATACCTCTCCTGGGCATATATCT
AGAAATTGTTCCAACCGGTAAGAAGGACACATGCTCCATTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAACATGGAAAGACCCAGATGCCCCTCAA
CAGCGCAGTGGATACACAAAATGTGGTACATTTACACAATGGAGTACTAC
TCAACTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAATGATGGA
TCTGGAGGGCATCATCCTGAATGAGGTAACCCAATCATAAAAGAACTCAC
ACGATATGTACTTCCTGATAAGTAGATATTAGCCCAGATTCTTAGAATAC
CCAAGTTACAAGATACAATTTGCAAACCACGTGAAACTCAAGAAGAATGA
AGACCAAAGAATGGATACTTTGCCACTTCTTGGAATTGGGAGCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTTATATAGGGAAAAATTGCAAGCAGGGTC
TTCCAGTCCTTGGTGTTAAATGATTTGGGTAGAGGAAAATTGGCCTTTAA
ACTGATGGGTACATAGCATCTGTTCAAACCACAAGGAGAGACCGCACATC
TAGCAGGGACATCTTGACCTGGGAACAATTCATCTTTTCTTACATCATCC
TGTTATTGTGACCAGATTATCCTGTTATTGTGAGCTGGCCACAGCTGTTA
TGTTGTATTTTCAACTGCTGAGAACACTTTGTGGTCTTTTTCTCAGAGGC
AAAGAGTGGAGCTATGTCACTCTGAAGATAAGTAACTCAAATGTCAAAAT
CTTGAATAAACAGAGCCTCCTGTTTTCAAATATTCATAGATAATTTCTAT
CAGGTGTTTTATCATGAATGTTGAACATAGCAGTTTCTGGTCTGGCCCTT
TACAGTTTGGAAATTCCACCTTCTATCTATGAGATATGACCCTCTACCTC
CATATCCTACAACCATGGAATCCCAAGTGGAAACTAGGCAATATTGGTAA
CCTTTTCTGTCACTTAAACCCCAGACACCCAACGGGACGAATTAATATCC
AGAGAAAATATAGAGCCCAAGGGTGGAGCTATGTCAATCTGAAGATAAGT
AACTCAATATGGAGTTTAAAAACAAAATGGGCTTTATCTTGCTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_g17.g1 MSMg01no274_g17.g1 CHROMAT_FILE:
MSMg01no274_g17.g1 PHD_FILE: MSMg01no274_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:57 2005
         (676 letters)



>mm_chr17_22673076_22674158
          Length = 1083

 Score =  924 bits (478), Expect = 0.0
 Identities = 632/688 (91%), Gaps = 17/688 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttatatagggaaaaattgcaagcagggtcttccagtccttggtgttaaatgatttgg 60
           |||||||||||||||||||||||||||||| |||||| || || |||||| |||||||||
Sbjct: 883 agtttatatagggaaaaattgcaagcaggggcttccaatcattagtgttacatgatttgg 824

                                                                       
Query: 61  gtagaggaaaattggcctttaaactgatgggtacatagcatctgttcaaaccacaaggag 120
           ||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 823 gtaaagggaaattggcctttaaactgattggtacatagcatctgttaaaaccacaagggg 764

                                                                       
Query: 121 agaccgcacatctagcagggacatcttgacctgggaacaattca--tcttttcttacatc 178
           ||||| |||||||||||| ||||||||||||| |||||||||||  | |||| |||||||
Sbjct: 763 agaccacacatctagcagagacatcttgaccttggaacaattcatgtttttttttacatc 704

                                                                       
Query: 179 atcctgttattgtgaccagattatcctgttattgtgagctggccacagctgttatgttg- 237
           ||||||||||| |||||||||||||||||||||||||||||||||||||   ||| ||| 
Sbjct: 703 atcctgttattttgaccagattatcctgttattgtgagctggccacagc---tattttgt 647

                                                                       
Query: 238 -tattttcaact-gctgagaacactttgtggtctttttctcagaggcaaagagt-ggagc 294
            |||| |||| | |||||||||||||||||||||||||||| ||| | |||||| |||||
Sbjct: 646 ctattgtcaa-tagctgagaacactttgtggtctttttctcggagcccaagagtgggagc 588

                                                                       
Query: 295 -tatgtcactctgaagataagtaactc-aaatgtcaaaatcttgaataaacagagcctcc 352
            | |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 587 at-tgtcactctgaagataagaaactcaaaatgtcacaatcttgaataaacagagcctcc 529

                                                                       
Query: 353 tgttttcaaatattcatagataatttctatcaggtgttttatcatgaatgttgaacatag 412
           ||||||||||||||||||||||||||||||||| || | ||| |||||| ||||||||||
Sbjct: 528 tgttttcaaatattcatagataatttctatcagttgctgtattatgaatattgaacatag 469

                                                                       
Query: 413 ----cagtttctggtctggccctttacagtttggaaattccaccttctatctatgagata 468
               ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 468 cagacagtttctggtgtggccctttacagtttggaaatttcacctcctatctatgagata 409

                                                                       
Query: 469 tgaccctctacctccatatcctacaaccatggaatcccaagtggaaactaggcaatattg 528
           ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 408 tgaccctctacctccatatcctacatccatggaatcccaggtggaaactaggcaatattg 349

                                                                       
Query: 529 gtaaccttttctgtcacttaaaccccagacacccaacgggacgaattaatatccagagaa 588
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 348 gtaaccttttctgtcacttaaaccccagacacccaatgggaagaattaatatccagagaa 289

                                                                       
Query: 589 aatatagagcccaagggtggagctatgtcaatctgaagataagtaactcaatatggagtt 648
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 288 attatagagcccaagggtggaactatgtcaatctgaagataagtaactcaatatggagtt 229

                                       
Query: 649 taaaaacaaaatgggctttatcttgcta 676
           |||||||||||||| ||||||| |||||
Sbjct: 228 taaaaacaaaatggactttatcctgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1083
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1073
Effective search space:   714618
Effective search space used:   714618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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