BAC Information

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BAC

Clone NameMSMg01-274P22
Chromosome17 (Build37)
Map Location 14,055,887 - 14,056,174
singlet/doubletsinglet
Overlap genenone
Upstream geneMas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464
Downstream geneEG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274P22.T7 (MSMg01no274_p22.b1)MSMg01-274P22.TJ (MSMg01no274_p22.g1)
ACCAG413566AG413567
length742739
length of high quality
(start - end)
204 (453 - 656)291 (69 - 359)
definitionCHROMAT_FILE: MSMg01no274_p22.b1 PHD_FILE: MSMg01no274_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:38 2005CHROMAT_FILE: MSMg01no274_p22.g1 PHD_FILE: MSMg01no274_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAACTGAATGACGCCAAAGGGCTGAGAAGCCCCTTGGAAAAAATGTTCAA
CATCCTTAATCATCAGAGAACCGCAAATCAAAACAACCCTGAGATTCCAC
CTTACACTAGTCAGAAAGGCTAAGATCAAAATTCAGGCGACAGCAGATGC
TGCCAAGGGTGTGGGGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTG
CAAGCTGGTACAACCACTCTGAAAATCAGTCTGGTGGTTAAACAGAAAAT
TGGACATAGTACTACCAGAAGATCCAGCAATACCTCTCCTGGGCATATAT
ACAGAATATGTTCCTACTTGCCCTNAACGAACCTGTTCCACTATGCTCAC
AGCAGCCTTATTTGTAATAGCCAGAAGAAGGAAAGAACCCAGATGTCCCT
CAACAGAGGAATGGATACAGAAATTGTGGTACGTTTACACAATGGAGTAT
TACTCAGCTATTAAAAACAATGAATTTATGAAATTTTTATGCCAATGGAT
GGATCTGGAAGAGATCATCCTCAGTAAGGTAACCCAATCTCAAAAGAACA
TGCATGTTATATACTCACTGATAAGTGGATATTAGCCCAGAAACTAAGAA
TACCCAAGATACTATTTGCAAAACACTAGATAATTAAGAAGAGGGAAGAC
CAACAGGCGGATACTTCTGTCGTTCTTAGAATGCGGGACAAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCTCCCTTTCCCTCTTCCCCTCCCCCCTCT
CTCCCCACCCCCTCCCCATCCCTACTCCTCTGTCTGTCTCTCAGCGTTTT
CAGCTGAGCAATGGTGGTGTATACCTCTAATCCCAGCATTTGGGAGGCAG
AGGCATAGCCAGGGCTGCACAGAGAAAACTTGTCTTGAAAAGATAAAACA
AAATAAAACCATCAGGAAAACATTTTGATCTTCACAGAACAGCTGGTTCT
TAAGGAAAAAACAAAGTCCCTTCCTGAGAACCTGGTAAGAGTTCCTGAGA
ACAAAGTGTTGTTCNTGTCCGNNACCCAACCCTGGGTTTTAGTCTGGAAA
GGCATTTTGGAAACCTGGAAGAGAAAAAGAACTAGGTGGCGAGAGAAAAG
AATGTAGCCAAGACAGTTACTCTGATCAAGGCTCAAATTTTATTGTTGCG
ACACTAGTTATGAAGGAAGTGGGAGGGGACCCGATTCCCGCCGAATAATC
TCTGGTCCAGTAGAAAGGTGCACGGGCGTGGCTCCGCAGGTTCCAGCAGT
GGGTGTGTCAGAACGAATGAGCAGGATTCTCCACCCCTGAGTAAGCAGGT
TTCAGGCTAGGTGAGGGGAGACTACCCTAAGGACTTCTACTGGCAATATG
TCAGGTGCCTAATTGCAGGCATTTGAGATAGTATTGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_p22.g1 MSMg01no274_p22.g1 CHROMAT_FILE:
MSMg01no274_p22.g1 PHD_FILE: MSMg01no274_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:38 2005
         (291 letters)



>mm_chr17_14055687_14056377
          Length = 691

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctccctttccctcttcccctcccccctctctccccaccccctccccatccctactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 cctctccctttccctcttcccctcccccctctctccccaccccctccccatccctacccc 260

                                                                       
Query: 61  tctgtctgtctctcagcgttttcagctgagcaatggtggtgtatacctctaatcccagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtctgtctctcagcgttttcagctgagcaatggtggtgtatacctctaatcccagca 320

                                                                       
Query: 121 tttgggaggcagaggcatagccagggctgcacagagaaaacttgtcttgaaaagataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgggaggcagaggcatagccagggctgcacagagaaaacttgtcttgaaaagataaaa 380

                                                                       
Query: 181 caaaataaaaccatcaggaaaacattttgatcttcacagaacagctggttcttaaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaataaaaccatcaggaaaacattttgatcttcacagaacagctggttcttaaggaaa 440

                                                           
Query: 241 aaacaaagtcccttcctgagaacctggtaagagttcctgagaacaaag 288
           ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaagtcccttcctgagaacctggtaagagttcctgagaacaaag 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)