BAC Information

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BAC

Clone NameMSMg01-275J09
Chromosome17 (Build37)
Map Location 12,888,337 - 12,888,535
singlet/doubletsinglet
Overlap geneIgf2r
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1
Downstream geneAir, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275J09.T7 (MSMg01no275_j09.b1)MSMg01-275J09.TJ (MSMg01no275_j09.g1)
ACCAG413995AG413996
length787757
length of high quality
(start - end)
199 (72 - 270)235 (123 - 357)
definitionCHROMAT_FILE: MSMg01no275_j09.b1 PHD_FILE: MSMg01no275_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:21 2005CHROMAT_FILE: MSMg01no275_j09.g1 PHD_FILE: MSMg01no275_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCATGCTGTTTACTGAAAACAGAAGTCCTTAGTGCTCAGAATCTGAA
AGCTGACCATGAGTAGGAATACCCCTGGCCTTTGTCCATGCGTCTCTGGT
ATCTCTGCATGCTGGTCACCTTTTTGCATGCCAATCACAAAGCAGTACAG
GTATTTCTCTAAGGCTGACAGTGAGAACTGCTGCAGTTCCATGTGAATTC
CTAATCTGCCAACCTTGGCATGTTTGTAAAGCACCGTTTCACTTTCTTCC
TGTTTCTAAGGAAAATTGGGGCAAAAATTTTCCTGGCCCCTCCCCAAAAA
TTCCAACCCCCCTGGGGGGCTCAAAATCAAAACATCTCCTCTCCTCTAAA
AAAAAATCTCCCAGAAAAAACGTTAGACCTTTTCATCACCCACCTTCCTT
GTTATCTTTTTTCTTATATCAACTACCTTTCTACCCACACACACCTCATC
CCTTTTATTCCACTCCCCAATTTTCCCCTTTAATACCTTTCTTTTTTTTA
AATTTTATCTCCCCTTTATATTACCCCCATTCTCCTTCTCCCTCTCCTTT
CTCATCTTCCCTTTTCATTTATCCCACTATCTATTCCATTTCCCACATAC
TCATAAAAATAAAAAACACCAAAACCCAGCTAATATCTCTATTATTATCC
TCATATTAGTATGCGCTTTTTCTCTCCTCCCAACCTTCTCTCTCATCCTT
ATTTCTCTCTTCTCTTCATCCCCTCTTACCCCTATTG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGTCAGAAAAAATTCCAGAGAGGTAATGAGGCACTGAATCAGG
TGAGAGAGTTGGTTTAGACGGTCTGTTTGTGTTTCCTCAGGATCATCGAC
AGCTGCTGTGGGTCCCGGGGCATTGACCAGAGCAATCCAAAATGAGCGGA
GTGGGGATGGCGTGGATGTTCCTGGTGTTGAGGACACTTCCCGTGGTGAT
GACTGAAGATCCACGTTGGGGAATCTTATCTGTGTTTCCCAAACCCATGC
CGTTGATGCATTCGGTACAGTGTTCCCTTGATTTTTCACATCTAATGCTT
CGCTGTTTTTACCCTTTCCACCCCGGGATGGGGAAATAGCGCCTGTGCAG
GAACCAACGCAGCTTCAGTTGAAGAAATTGCTATGCTTTCAAATGATTCA
AGATATTTCTCAGAATAGTGGCTGCATTCAAATGTATAATCAAACAGCAG
CATGGTTTGATATGCCAATTACTAGTTCTACTAAAGCTAATGCCACATGG
ACTCAAGGAGTGTGGCCTGCCAGTATTTCCAAAGGCAATGATACCATACC
TCCCCAACCTAGATGGACTCCATTTTGCAAGGGTACCCGTGATTCCCTTC
CACCATGGACTGGGTGTCAGTCTACAAAGGCAGCTTGCGCTGTAAAGAAA
TATTTTACTTTTCTCCTTAATTGGCACACCCCATAATAGCTCATTTTCAG
GATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_j09.b1 MSMg01no275_j09.b1 CHROMAT_FILE:
MSMg01no275_j09.b1 PHD_FILE: MSMg01no275_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:21 2005
         (199 letters)



>mm_chr17_12888137_12888735
          Length = 599

 Score =  354 bits (183), Expect = e-102
 Identities = 195/199 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaagtccttagtgctcagaatctgaaagctgaccatgagtaggaatacccctggcct 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 399 acagaagtccttagtgctcagaatctgaaagctgaccatgagtaggaacacccttggcct 340

                                                                       
Query: 61  ttgtccatgcgtctctggtatctctgcatgctggtcacctttttgcatgccaatcacaaa 120
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 339 ttgtccatgcatctctggtatctctgcatgctggtgacctttttgcatgccaatcacaaa 280

                                                                       
Query: 121 gcagtacaggtatttctctaaggctgacagtgagaactgctgcagttccatgtgaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcagtacaggtatttctctaaggctgacagtgagaactgctgcagttccatgtgaattcc 220

                              
Query: 181 taatctgccaaccttggca 199
           |||||||||||||||||||
Sbjct: 219 taatctgccaaccttggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)