BAC Information

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BAC

Clone NameMSMg01-276D07
Chromosome17 (Build37)
Map Location 76,844,557 - 76,844,873
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrp3, 2810405J04Rik, LOC668787, LOC100043885, LOC100043886
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D07.T7 (MSMg01no276_d07.b1)MSMg01-276D07.TJ (MSMg01no276_d07.g1)
ACCAG414454AG414455
length749933
length of high quality
(start - end)
321 (46 - 366)---
definitionCHROMAT_FILE: MSMg01no276_d07.b1 PHD_FILE: MSMg01no276_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:06 2005CHROMAT_FILE: MSMg01no276_d07.g1 PHD_FILE: MSMg01no276_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCGGTTTTTACTCTCTTCTTACTCCTTCAGGTACAGGAATAGAT
GCTCACAGTCCTAGCACTTTTTTCTTACCCTCATGCAACATTTAATGTTT
TAGCCACTTCTAGTCTCTTGACTTCACTCTTTCCCTGAGTTACATTCTGC
ATTGTCTTATTTTCTTCCTGTCCCCAATTCTCTCATCATTTTGTGATCCA
TGCTCTTAAATATACCATTACCTTGAAGTTTTATCTTTCATCCTATAATG
ATGAATTTCATCTTCTGATATTATATCCAGTTTCATGATCTTATCAGATA
CCTATTGCAAATGACTTCTTATTATTGCACACTCTACCTGAATTCTCCAT
TACACTCAATTCACCTACATACCTGCTAGGTACTGACATCTTCCACATTA
TTACTGATAATTCAGTATCTTAAGGAATGGTGATCCCATTTTCCCTTTTA
AATTTACTTCCCCACAGTGGTGAAAAAAACATTCCCTTTGAAAAAAAAAC
CCCCCCCAAATTTCTCCATTCTTTTTAAAAATATCTTAAATATTTTTTTT
TTTTTATTTCCTAAATCCCTTTTTATATTACCTTATTATTTTCTATTTTT
ATTTTTTCTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCTTTCTCT
ATTACTCATTTATATTCTCCATTTATATTTAAATCAACACTATAAACCA
NNCCTTTTTTTTTCTTTTTCGCTGCCCTTTTGGTTCAGCGACGTAATACA
GACGGCATGTAGGAGAAGCCGGAGGGAGATGGGATGTGTTTATTAACGTC
TATCGACAGGAATATTTTAGAAAATCAATTTCTATAGTTATGCCGCCTCG
TAACTCACACGCCCACGCACCTCTTTTCCCCCACCCAATCCGATTTTATG
AGGGGAGTATTTATTATTTTTTTCCCCGACGCCAAGCCAACAAAAGGGTG
GAGACGAGGATGAAGTAGATGGAGGGCAAAATTAAACTTCTCCGTCCTCT
TTTTCACTCTACTTCAACTCTAATAAAAATAAAACACAAAAGAAAAAAAA
ATACACAAAGGCGTGAGTCGATACTAGCGTGCTGTCGTCACTGTACCACT
CTCTCCCTTTACTTTTCCTCAGCCTTCCCGACTTGTCGTGTACGTCACGT
TTTTTTTGCGATAGTAAAAATACGATGGGAAAAGATATGACAGAGTTAAA
ACCTGCTTATCAGTATGGTGCGTGTATTTATATCTTACATATTATAGCTC
AACCTTATAACCTNNCCCGGGGGGTTNTTTTNNNTTCCTGCCTATTTCCA
TGTCTGTTTTTAGGCACCTAGGCCCGTCCCCGACCNTGGNTNGTTCCGAG
CNCATCTTGGACCTGTTTNCATCACTANTCAGTGTAAGTNNATTNNCCGG
NNTCTTAAGTGCTATGATTNCAAAAAGGTTCTTCAAGAGACTATAAATCC
CCTTATTGAANCCACAAACCACTAGTNTTGGTAACCGTTGTAAAAGGTTA
GGCANANGANGCAGNNANTTANTACAACCCTAAGTCCCAGGGCACCATGG
TCATTTCTNNNTANTATNAAGTTCTTTTTTTTTACTCCTGTCAAGCGTNA
ACTATTACNTTCNGCCTGANNATNTATCTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d07.b1 MSMg01no276_d07.b1 CHROMAT_FILE:
MSMg01no276_d07.b1 PHD_FILE: MSMg01no276_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:06 2005
         (321 letters)



>mm_chr17_76844354_76845073
          Length = 720

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%), Gaps = 1/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcggtttttactctcttcttactccttcaggtacaggaatagatgctcacag 63
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattcatcggttttta-tctcttcttactccatcaggtacaggaatagatgctcacag 262

                                                                       
Query: 64  tcctagcacttttttcttaccctcatgcaacatttaatgttttagccacttctagtctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcctagcacttttttcttaccctcatgcaacatttaatgttttagccacttctagtctct 322

                                                                       
Query: 124 tgacttcactctttccctgagttacattctgcattgtcttattttcttcctgtccccaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgacttcactctttccctgagttacattctgcattgtcttattttcttcctgtccccaat 382

                                                                       
Query: 184 tctctcatcattttgtgatccatgctcttaaatataccattaccttgaagttttatcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctctcatcattttgtgatccatgctcttaaatataccattaccttgaagttttatcttt 442

                                                                       
Query: 244 catcctataatgatgaatttcatcttctgatattatatccagtttcatgatcttatcaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catcctataatgatgaatttcatcttctgatattatatccagtttcatgatcttatcaga 502

                             
Query: 304 tacctattgcaaatgact 321
           ||||||||||||||||||
Sbjct: 503 tacctattgcaaatgact 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)