This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-276E21
Chromosome
17 (Build37)
Map Location
41,788,654 - 41,788,991
singlet/doublet
singlet
Overlap gene
none
Upstream gene
EG619517
,
Crisp2
,
Rhag
,
9130008F23Rik
,
EG435528
,
Cenpq
,
Mut
,
Ldha-ps3
,
LOC627577
Downstream gene
LOC627626
,
Opn5
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG619517
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:619517
MGI:3645915
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Crisp2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22024
MGI:98815
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rhag
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19743
MGI:1202713
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
9130008F23Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:71583
MGI:1918833
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG435528
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:435528
MGI:3647683
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
name
Cenpq
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:83815
MGI:1933744
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Mut
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17850
MGI:97239
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ldha-ps3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:277225
MGI:96762
definition
gene_synonym
: Ldh-1ps3; Ldh1-ps3
note
: lactate dehydrogenase A, pseudogene 3
pseudo
: _no_value
name
LOC627577
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627577
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC627626
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627626
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 5 Proteins
name
Opn5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:353344
MGI:2662912
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG619517
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:84370325
GeneID:619517
MGI:3645915
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG619517
transcript_id
: NM_001038500.1
name
Crisp2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6678422
GeneID:22024
MGI:98815
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cysteine-rich secretory protein 2
transcript_id
: NM_009420.1
name
Rhag
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130207
GeneID:19743
MGI:1202713
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Rhesus blood group-associated A glycoprotein
transcript_id
: NM_011269.2
name
9130008F23Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142383729
GeneID:71583
MGI:1918833
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 9130008F23 gene
transcript_id
: NM_027834.2
name
EG435528
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149268711
GeneID:435528
MGI:3647683
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
product
: predicted gene, EG435528
transcript_id
: XM_487484.3
name
Cenpq
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142357205
GeneID:83815
MGI:1933744
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: centromere protein Q
transcript_id
: NM_031863.2
name
Mut
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6678969
GeneID:17850
MGI:97239
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: methylmalonyl-Coenzyme A mutase
transcript_id
: NM_008650.1
name
LOC627626
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268851
GeneID:627626
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 5 Proteins
product
: similar to CG11212-PA
transcript_id
: XM_001000454.2
name
Opn5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142382780
GeneID:353344
MGI:2662912
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: opsin 5
transcript_id
: NM_181753.3
name
EG619517
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:84370326
CCDS:CCDS28785.1
GeneID:619517
MGI:3645915
definition
codon_start
: 1
product
: exocrine gland-secreting peptide 1
protein_id
: NP_001033589.1
name
Crisp2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678423
CCDS:CCDS28786.1
GeneID:22024
MGI:98815
definition
GO_component
: GO:0005576 - extracellular region [Evidence IEA]
codon_start
: 1
note
: testis specific gene 1
product
: cysteine-rich secretory protein 2
protein_id
: NP_033446.1
name
Rhag
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755322
CCDS:CCDS28787.1
GeneID:19743
MGI:1202713
definition
codon_start
: 1
product
: Rhesus blood group-associated A glycoprotein
protein_id
: NP_035399.1
name
9130008F23Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58037251
GeneID:71583
MGI:1918833
definition
codon_start
: 1
product
: hypothetical protein LOC71583
protein_id
: NP_082110.1
name
EG435528
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149268712
GeneID:435528
MGI:3647683
definition
codon_start
: 1
product
: similar to OTTHUMP00000016587
protein_id
: XP_487484.3
name
Cenpq
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:13994186
CCDS:CCDS28789.1
GeneID:83815
MGI:1933744
definition
GO_component
: GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
codon_start
: 1
product
: centromere protein Q
protein_id
: NP_114069.1
name
Mut
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678970
GeneID:17850
MGI:97239
definition
EC_number
: 5.4.99.2
GO_component
: GO:0005739 - mitochondrion [Evidence IEA]
GO_function
: GO:0031419 - cobalamin binding [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004494 - methylmalonyl-CoA mutase activity [Evidence IDA]
GO_process
: GO:0008152 - metabolism [Evidence IEA]; GO:0009791 - post-embryonic development [Evidence IMP]
codon_start
: 1
exception
: unclassified translation discrepancy
product
: methylmalonyl-Coenzyme A mutase
protein_id
: NP_032676.1
name
LOC627626
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:94401988
GeneID:627626
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001000454.1
name
Opn5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:38678530
GeneID:353344
MGI:2662912
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007602 - phototransduction [Evidence IEA]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA]
codon_start
: 1
note
: G protein-coupled receptor 136
product
: opsin 5
protein_id
: NP_861418.2
name
LOC627577
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:627577
definition
number
: 1
pseudo
: _no_value
name
Ldha-ps3
(CDS detail)
type
misc_feature
link
vega
ensembl
xref
definition
gene_synonym
: Ldh-1ps3; Ldh1-ps3
note
: M14
pseudo
: _no_value
name
Ldha-ps3
(CDS detail)
type
misc_feature
link
vega
ensembl
xref
definition
gene_synonym
: Ldh-1ps3; Ldh1-ps3
note
: insertion sequence (242 nucleotides)
pseudo
: _no_value
name
Ldha-ps3
(CDS detail)
type
misc_feature
link
vega
ensembl
xref
definition
gene_synonym
: Ldh-1ps3; Ldh1-ps3
note
: polyA signal
pseudo
: _no_value
name
Ldha-ps3
(CDS detail)
type
misc_feature
link
vega
ensembl
xref
definition
gene_synonym
: Ldh-1ps3; Ldh1-ps3
note
: polyA tail
pseudo
: _no_value
name
(CDS detail)
type
misc_feature
link
xref
definition
note
: direct repeat 1
clone name
MSMg01-401J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-427C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501E16
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-272B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111M04
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-261G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-530O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-307O24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-138I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-349P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-184G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-445I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442P04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474D08
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-419G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-117P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236A20
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-543J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-176D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532M17
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-051M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-276E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-174H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-358N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-153O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522G01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-263F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187F04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-094I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072G13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-084G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-348C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-180A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-374B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261H12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-292P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338O22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-206F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-173F14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161B18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-052E12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-336O11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-247G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130D17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-252F23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-110P05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-338P10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-280J21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-147M06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-066F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-348K01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-116B20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-299J23
singlet/doublet
singlet
plural/unique
unique
clone name
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doublet
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