BAC Information

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BAC

Clone NameMSMg01-276F03
Chromosome17 (Build37)
Map Location 14,358,811 - 14,359,358
singlet/doubletsinglet
Overlap genenone
Upstream geneSmok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2
Downstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276F03.T7 (MSMg01no276_f03.b1)MSMg01-276F03.TJ (MSMg01no276_f03.g1)
ACCAG414537AG414538
length751754
length of high quality
(start - end)
633 (45 - 677)543 (77 - 619)
definitionCHROMAT_FILE: MSMg01no276_f03.b1 PHD_FILE: MSMg01no276_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:14 2005CHROMAT_FILE: MSMg01no276_f03.g1 PHD_FILE: MSMg01no276_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCTGCTCTAACCCATTTTTAAATGGGGTTATTTGATTTTCT
AGAGCCAGCCTTCTTGATTTCTCCATATATATTGGATATTAGTCCCATAT
CTATTTAGGATAGATAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGG
TCCCATTTATTGATTCTTGATCTTACTGCACAAGCCATTGCTGTTCTATT
CAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCT
ACTCTATAAGTTTCTGTGTCTCTGGCTCTATGTGGAGTTCCTTAATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCT
TCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCCAAAATCAAGTGATCA
TAGGTGTGTGGGTTCATCTCTGGGTCATCAATTCTATTCCATTGGTCTAC
TTGTCTGTCACTATACCAGTACCGTGCAGGGTTTATCACAATTGCTCTGT
AGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTACTTTGGAAG
TTTAGGGCCTGGGGCATGCAGGTCATCCTGTTCAGGNAGGTGTGGACAGT
T
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTGCTGGGACAAAGGGGAAT
CCTTGACTTAGGAAGCTTATTCACCCGACAGCAAGCAACACAAATGGGAA
AAAAAAAGGAAAGAAAGAAAATGACTGTAGTTTGAGTTGGTGGCATGAAT
GGATAACCCAGTTTGCATTTTCAATTTCCAGCAGCCTTATTGAGGTGTAA
TGTAATCGTCACAGAATAAGCCACCTCTCTGGGGAGTACACGGGGCACCA
TGAGCCCCTAGCGATTAGGATGCTTGCTCTAATGGTTTCCCTCTGTGCTC
CACGCATGGCCCAAGTTGCTCCTGGCTCCACAGGCTGCTGTGTAGCCAGC
GGATGGATGGTCACACAGATCTCCACTCATCTGCTCTGTATGGTTACTTC
TTGTATGTGCATGTGGACGCACACATGTGTGTGTGCACATCAAGACCTAA
AGTTGACATTAAGGGTCTCTCCACTGAACCCACAGATCTCCAATTCTGAC
TAGTCCAGCTAGCCAGCTTACTCCAAGGATGTACTGTCTATGCCTCTTGA
GTGGCTGAGATTACAGGGAGCCACTGGACCTGCCTGCTCTTAGGTGGGTG
CCAGGGTTCTAAACTCAGAATCTCATGTTCATTCAGTCTCCCACAAGGCC
CCCTAACTCTTCAGTCTCAGTTTATTCGAAGGTCTTTGAAAGCCTTTCAG
TACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_f03.g1 MSMg01no276_f03.g1 CHROMAT_FILE:
MSMg01no276_f03.g1 PHD_FILE: MSMg01no276_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:14 2005
         (543 letters)



>mm_chr17_14358634_14359580
          Length = 947

 Score =  857 bits (443), Expect = 0.0
 Identities = 519/561 (92%), Gaps = 31/561 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccctgctgggacaaaggggaatccttgacttaggaagctt--attcacccgacagcaa 58
           ||||||||||||||||||||||||||||||||||||||||||  ||  ||  ||||||||
Sbjct: 725 ctccctgctgggacaaaggggaatccttgacttaggaagcttacat--acgtgacagcaa 668

                                                                       
Query: 59  gcaacacaaat------------gggaaaaaaaaaggaaagaaagaaaatgactgtagtt 106
           |||||||||||            |||         ||  |||||||||||||||||||||
Sbjct: 667 gcaacacaaatggggggggggggggg---------gg--agaaagaaaatgactgtagtt 619

                                                                       
Query: 107 tgagttggtggcatgaatggataacccagtttgcattttcaatttccagcagccttattg 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgagttggtggcatgaatggataacccagtttgcattttcaatttccagcagccttattg 559

                                                                       
Query: 167 aggtgtaatgtaatcgtcacagaataagccacctctctggggagtacacggggcaccatg 226
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 558 aggtgtaatgtaatcgtcacagaataaaccacctctctggagagtacacggggcaccatg 499

                                                                       
Query: 227 agcccctagcgattaggatgcttgctctaatggtttccctctgtgctccac----gcatg 282
           ||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||
Sbjct: 498 agcccctagcgattaggatgcatgctctaatggtttccctctgtgctccacgcatgcatg 439

                                                                       
Query: 283 gcccaagttgctcctggctccacaggctgctgtgtagccagcggatggatggtcacacag 342
           | |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtccaagccgctcctggctccagaggctgctgtgtagccagcggatggatggtcacacag 379

                                                                       
Query: 343 atctccactcatctgctctgtatggttacttcttgtatgtgcatgtggacgcacacatgt 402
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atctccactcacctgctctgtatggttacttcttgtatgtgcatgtggacgcacacatgt 319

                                                                       
Query: 403 gtgtgtgcacatcaagacctaaagttgacattaagggtctctccactgaacccacagatc 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgtgtgcacatcaagacctaaagttgacattaagggtctctccactgaacccacagatc 259

                                                                       
Query: 463 tccaattctgactagtccagctagccagcttactccaaggatgtactgtctatgcctctt 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 tccaattctgactagtccagctagccagcttactccaaggatgtactgtctatgcttctt 199

                                
Query: 523 gagtggctgagattacaggga 543
           |||||||||||||||||||||
Sbjct: 198 gagtggctgagattacaggga 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 947
Length adjustment: 10
Effective length of query: 533
Effective length of database: 937
Effective search space:   499421
Effective search space used:   499421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)