Query= MSMg01no276_g05.b1 MSMg01no276_g05.b1 CHROMAT_FILE:
MSMg01no276_g05.b1 PHD_FILE: MSMg01no276_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:19 2005
(232 letters)
>mm_chr17_43836022_43836647
Length = 626
Score = 362 bits (187), Expect = e-104
Identities = 219/233 (93%), Gaps = 8/233 (3%)
Strand = Plus / Plus
Query: 1 agcttatcccttccactggtagctcacaggaggaagaacctgaggagggaccaaggcgac 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 agcttatcacttccactggtagctcacaggaggaagaacctcaggagggaccaaggcgac 260
Query: 61 agtggcctgggcactgtgtgaagatgagctagataatctccaggctgagcccttcctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggcctgggcactgtgtgaagatgagctagataatctccaggctgagcccttcctaat 320
Query: 121 ccagatgctgccctagaatgtctgcatcgcaggtgtctttggtcgactgttcacccctgt 180
||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct: 321 ccagatgctgccctagaatgtctgcatcgcacgtgt------tcgtctgttcacccctgt 374
Query: 181 gcttccagcttag-gcttcctttcaatgctgcacttcctcctttgaccacacg 232
|||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 375 gcttccagcttaatgca-cctttcaatgctgcacttcctcctttgaccacacg 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 626
Length adjustment: 9
Effective length of query: 223
Effective length of database: 617
Effective search space: 137591
Effective search space used: 137591
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_g05.g1 MSMg01no276_g05.g1 CHROMAT_FILE:
MSMg01no276_g05.g1 PHD_FILE: MSMg01no276_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:19 2005
(284 letters)
>mm_chr17_43970250_43970936
Length = 687
Score = 503 bits (260), Expect = e-147
Identities = 277/284 (97%), Gaps = 3/284 (1%)
Strand = Plus / Minus
Query: 1 atatttgtcatattgttattccagatgtttttcacataatatgtgca---gttattttta 57
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 atatttgtcatattgttattccagatgtttttcacataatatgtgcagttgttattttta 425
Query: 58 atcccactagagtactattttcataaaaaatatttgctaagaatatcaaaacagtactac 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atcccactagagtactattttcataaaaaatatttgctaagaatatcaaaacagtactac 365
Query: 118 ttttattaaaagtgtataggaagactaaaatctcgttagaatccaggaacctggaacaca 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttattaaaggtgtataggaagactaaaatctcgttagaatccaggaacctggaacaca 305
Query: 178 gatcactgtcaggccttcttaatcgcagatttcaactgaaccaaacaggtttccaaacct 237
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 304 gatcactgtcaggccttcttaatcgcaaatttcaactgaactaaacaggtttccaaacct 245
Query: 238 tgtcagatgatttctgagcatcaaagtacgattcatagctgaac 281
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 244 tgtcagatgagttctgagcatcaaagtacgattcatagctgaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 687
Length adjustment: 9
Effective length of query: 275
Effective length of database: 678
Effective search space: 186450
Effective search space used: 186450
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
