BAC Information

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BAC

Clone NameMSMg01-276H12
Chromosome17 (Build37)
Map Location 15,185,689 - 15,185,990
singlet/doubletsinglet
Overlap gene9030025P20Rik
Upstream geneEG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, Tcte3
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H12.T7 (MSMg01no276_h12.b1)MSMg01-276H12.TJ (MSMg01no276_h12.g1)
ACCAG414646AG414647
length724721
length of high quality
(start - end)
312 (45 - 356)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no276_h12.b1 PHD_FILE: MSMg01no276_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:25 2005CHROMAT_FILE: MSMg01no276_h12.g1 PHD_FILE: MSMg01no276_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGTGAAACATGCGCTTGCCGTTGCCAAGATGGCTCTGTAAGTTA
TTGGAAGACCCTTTTAAACTTCACCCCTTCCCACTGCTCTGGATGCTATT
GGCCCTGAGAGTCACAGCTAGAGCTGGTCTCTTCCTCAGATGTGCTACCA
TTCAGAAATCTTGGGGGCATTCATGGTATCTGTTCTTCTTTCCTCTCACC
TTGTCTACATCTGTATGAGTGGCCATTATATCAGATGTGCCAATAGTAGA
AAATTGCTGTATCTTCTGAGACTACTTCTTTTTTGGGGGGAGGGGGTGGA
TTCCTTCTTTTTTTTTCACCCCCCCCCCCCCCCTCNTTNTAAGGTCTGGT
ACTGTCCTGCTGTCTGCACAAAAAAAAAAAAAACCTGGTGGTTGGGGAGT
TGACTCAGTGGTAATAAAACTGTTTGCTCTTCCAAAGGACCTGGATTTAA
TTGCCAATACCCACAGGGCAGCTCACAACTGTCTGCTACTCCACTCCCAG
GATAGCTGATATTCTCACCCATACATACCAGCCGGCAGAATTATTTATGC
CCATAATATATTACTATATATTCCCGTTTCTATAACTGAAAATGGAGCCA
TGATGCTTCTTATGCGTGAGAGATTGAAAGGTTTATATCACACGTAATCT
TTATGCCTTCCTGCTTGTGTGGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATGCACAGACCTTAGTTGTATA
AACCTTGCACGCCAATCTAAAGCCATTGCTTAAATAAAAGTGGCTACAGC
CAACTTCTTGGGAGAGCAGAGGTATTCGAGGCTTCAGTTACAGGGCTGAG
GGGGGAGGGTCACAGATAAGGACCACGTGGAGAAAGCGGAAGTAGGAGAG
AGGAGAGGTGAAGGATATGGGAGAACGGGAGGTCTCCATTAGTCAGATGG
AGTAGGAGCATGTGGCCGAGTGAAATGTCCCCTAAGGCAGAAATAACCTG
GCGAGACTCATTTTTATTTACCCCCCACCACTCACCTACTCTATTTTTAG
CATAGAAAAAAAAAATAGATTGGGGCCAATTCACCCTGTAATTGTGCTAA
AGCTGAATAACTGAATCATAGGACTCAGTCTTGATTATTGGGGGGCTGAC
TGGGTCAAATTAAAAACTAATAGAGTTTATTAAATATCACTTACACTAAA
CAGGTGTGACTTTCTTGTTGGCTCTTGGGTCTCTGAATTTCTTCCAGGGA
GGTTAAGGCTTAGGCACATTTCTGCAGTTCCAGGCCAGCATCAGCATCAC
AGAGCACTTGAGAAGCAGACAAGGACATCTATGGTAGAGTCCTGGGGAGA
GGACCTCTGTGATTTATAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h12.b1 MSMg01no276_h12.b1 CHROMAT_FILE:
MSMg01no276_h12.b1 PHD_FILE: MSMg01no276_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:25 2005
         (312 letters)



>mm_chr17_15185485_15186194
          Length = 710

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%), Gaps = 2/304 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggtgaaacatgcgcttgccgttgccaagatggctctgtaagttattggaaga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggtgaaatatgcgcttgccgttgccaagatggctctgtaagttattggaaga 264

                                                                       
Query: 65  cccttttaaacttcaccccttcccactgctctggatgctattggccctgagagtcacagc 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 cccttttaaacttcaccccttcccactgct-tggatgctattggccctgagagtcacagc 323

                                                                       
Query: 125 tagagctggtctcttcctcagatgtgctaccattcagaaatcttgggggcattcatggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagagctggtctcttcctcagatgtgctaccattcagaaatcttgggggcattcatggta 383

                                                                       
Query: 185 tctgttcttctttcctctcaccttgtctacatctgtatgagtggccattatatcagatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgttcttctttcctctcaccttgtctacatctgtatgagtggccattatatcagatgt 443

                                                                       
Query: 245 gccaatagtagaaaattgctgtatcttctgagactacttcttttttggggggagggggtg 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccaatagt-gaaaattgctgtatcttctgagactacttcttttttggggggagggggtg 502

               
Query: 305 gatt 308
           ||||
Sbjct: 503 gatt 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 710
Length adjustment: 9
Effective length of query: 303
Effective length of database: 701
Effective search space:   212403
Effective search space used:   212403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)