Query= MSMg01no276_k17.b1 MSMg01no276_k17.b1 CHROMAT_FILE:
MSMg01no276_k17.b1 PHD_FILE: MSMg01no276_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:39 2005
(289 letters)
>mm_chr17_83073615_83074303
Length = 689
Score = 499 bits (258), Expect = e-146
Identities = 279/286 (97%)
Strand = Plus / Plus
Query: 1 tcatttgagaaaacctgaccgattgattagaacctggcaacctggccaccctaatttaaa 60
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcatttgagagaacctgaccgattgattagaacctggcaacctggccacactaatttaaa 260
Query: 61 aaatcaggtaaagctttttcctaactatattttgaggtcatacattccctcctctaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcaggtaaagctttttcctaactatattttgaggtcatacattccctcctctaaatc 320
Query: 121 cattgcccaagcttgaagagcttaagctgagaaggagggcaactctataggaaaaccagc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cattgcccaagcttgaagagcttaagctgagaaggagggaaactctataggaaaaccagc 380
Query: 181 agtctcaactaacctggacccccgagattgctctgacactgaaacatcaaccaggcagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctcaactaacctggacccccgagattgctctgacactgaaacatcaaccaggcagca 440
Query: 241 tacaccatctatatgaaacccccagcacatatacagcagaggactg 286
||||||| ||||||||| |||||| | |||||||||||||||||||
Sbjct: 441 tacaccagctatatgaagcccccaactcatatacagcagaggactg 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_k17.g1 MSMg01no276_k17.g1 CHROMAT_FILE:
MSMg01no276_k17.g1 PHD_FILE: MSMg01no276_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:39 2005
(314 letters)
>mm_chr17_83235790_83236503
Length = 714
Score = 557 bits (288), Expect = e-163
Identities = 306/312 (98%), Gaps = 2/312 (0%)
Strand = Plus / Minus
Query: 1 tgctagtcctgaagcccagtggacttgtatttacagagc-gacctgcccattctgtgctc 59
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 511 tgctagtcctgaagcccagtggacttgtatttacagagcag-cctgcccattctgtgctc 453
Query: 60 atttttttctgcacaactgacttcacactccagtttgcttttgtccttgggcagcatgca 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acttttttctgcacaactgacttcacactccagtttgcttttgtccttgggcagcatgca 393
Query: 120 ctgcaacttgagtttcaagttaaggtattagacatgaagtatatataatatatagaatgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 392 ctgcaacttgagtttcaagttaaggtattagacatgaagtatatataatatatagcatgc 333
Query: 180 atattatataattctttcttacttggttaacaaaagctttcttcctaaaaaagcccatgt 239
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 332 atattatataattctttcttacttggttaacaaaagctttcttcctgaaaaagcccgtgt 273
Query: 240 aaagatgcgtataactgcacatacaccacttcccatgagtgcctctgtacagtgactgag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaagatgcgtataactgcacatacaccacttcccatgagtgcctctgtacagtgactgag 213
Query: 300 ggtgtcacaccg 311
||||||||||||
Sbjct: 212 ggtgtcacaccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
