BAC Information

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BAC

Clone NameMSMg01-278A12
Chromosome17 (Build37)
Map Location 24,324,981 - 24,325,221
singlet/doubletsinglet
Overlap geneTbc1d24
Upstream geneZfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c
Downstream geneNtn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278A12.T7 (MSMg01no278_a12.b1)MSMg01-278A12.TJ (MSMg01no278_a12.g1)
ACCAG415766AG415767
length712820
length of high quality
(start - end)		---242 (133 - 374)
definitionCHROMAT_FILE: MSMg01no278_a12.b1 PHD_FILE: MSMg01no278_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:15 2005CHROMAT_FILE: MSMg01no278_a12.g1 PHD_FILE: MSMg01no278_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCAC
CTTCAGAAGAGCAAATGGTGCTCTTATGCACTGATTCATCCCTACAGACC
ACTTTTTAACTTCTAATTGAATCAGTGAGGTACACATCATGGACCACAAA
CCTGGACATCTCCCTGCCCCCATCGTATTTAACTCTCAACATTGCATCCT
TCCTCCGAAAAGAAATACCCACACXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCC
GAGGACACTGTTTTGTGTCACATCGCGACCCAGAGGATATCTGGCAGTAT
TATCTTGTACTCCAGCCCAGAACCATTACTGAGAATGAATACCTCTGACA
TCAGACTACATTTAAAAAATAGATCTATAGCAGGAGTCCTACCGTCTACC
TTGATGAAGCTCTGAATCTTGTAAAACCTGTGAATTTGGAACTGGTCATT
TAATGAATGCTGACCACTCAAAGATGAAACAGATTAAGGAGTAGGCATGA
CTAAAAGTCCTAAATCTGGTGATGACTTCCAACAGATCAGGTGATCAAAT
TGACCCCGCGAGAGCTGTCCCACTGAACTGGTATTTCAACTTGGTTCCTG
GATACCGCCCCCCTTGAAATGAATATACATGACATTCACCTCACCCGATA
GTCTCCGGTCTG

TTTTTTTTTATTNTTTCTCTTTTTTTTTTATTTTCTTCCTCTCTGCGGNN
GNCCCGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTAACCGTGTTGAG
GGACAAGTGGAAAGGTGCTGAAATTTCACCACCAGACACTTAGTTCCAAT
TAAACTACAGCTAGGAGTCTTAGGGGAGATGATAGCATCTCACTACCCGG
CAGCCACTGTGATCCAGACACACATATGGCGTGGGCGAGCAGGATATAGC
ACACCATGCTTGAAACACCAGAACTCTGGAGAAGGGGAATCACAAAGAAC
ATGAGTTCAACCCCTGCCTGGGCTACTTTTTATATCCAAGACTAAGTTAC
ATAGTGAGACCTCATTGANATAAATCCGNGGTCTGNNCCCAAGGNCCAGC
AGTTAAGAGTATGGGGTGGTTTTTTTTTAAAAAAAAAAAAAGTTTCTTCG
AGACGGGGTTTCTCTGTTGTTTTTCTGGCTGAACTGGAAATAACTATGCA
CGACAATTTGTTTCCCTCATCATTTTTACTATATTTGACCTCGTTCTTCC
AGTCGTTACCCCTTTCGTTTCGTCGGTGGAACCCTGCGATTTTTTATCAT
TCCCTCGTTCGCATCTATTCCTCTCTCCTGTTCTCTTGCCCGTTCTGCGC
TCGCCCTTTTAGTTCCACCCCTTCACCACTCTTCCTGTTCTTCTCATCGA
CCCCTATGCCCCTCTTCTCTCTTTGGCCCTCACTTTCTCTTTCTTTCACC
ATTATTCTTCTTACCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_a12.g1 MSMg01no278_a12.g1 CHROMAT_FILE:
MSMg01no278_a12.g1 PHD_FILE: MSMg01no278_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:16 2005
         (242 letters)



>mm_chr17_24324781_24325421
          Length = 641

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagtaaccgtgttgagggacaagtggaaaggtgctgaaatttcaccaccagacactta 60
           |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||
Sbjct: 201 tgtagtaaccgtgttgagggacaagtgg-aaggtgctgaaatttcaaaaccagacactta 259

                                                                       
Query: 61  gttccaattaaactacagctaggagtcttaggggagatgatagcatctcactacccggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttccaattaaactacagctaggagtcttaggggagatgatagcatctcactacccggca 319

                                                                       
Query: 121 gccactgtgatccagacacacatatggcgtgggcgagcaggatatagcacaccatgcttg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 gccactgtgatccagacacacatatggcgtgggtgagcaggatatagcacaccatgcttg 379

                                                                       
Query: 181 aaacaccagaactctggagaaggggaatcacaaagaacatgagttcaacccctgcctggg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 aaacaccagaactctggagaaggggaatcacaaagatcatgagttcaacccctgcctggg 439

             
Query: 241 ct 242
           ||
Sbjct: 440 ct 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space:   147256
Effective search space used:   147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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