BAC Information

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BAC

Clone NameMSMg01-278B03
Chromosome17 (Build37)
Map Location 36,736,954 - 36,737,579
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896
Downstream geneH2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278B03.T7 (MSMg01no278_b03.b1)MSMg01-278B03.TJ (MSMg01no278_b03.g1)
ACCAG415796AG415797
length830725
length of high quality
(start - end)
---628 (77 - 704)
definitionCHROMAT_FILE: MSMg01no278_b03.b1 PHD_FILE: MSMg01no278_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:18 2005CHROMAT_FILE: MSMg01no278_b03.g1 PHD_FILE: MSMg01no278_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACGGGGTCAATTTGTTTTTATATGTATCCCGCTGCTTTTGGAATAGGTTA
AGTTTAGAAGGAGCGAGCTAAGGGTATAAATTCAATAGGGGAGGGGAAAG
CAATATTTTTCCTGTAAAAGCTTTCTCACCCCCTTACATTAACTCTACTT
ATAAAAAATCGTTCGAATTAAAGGCCCATATAATTATCCCTAATTCTCTT
TATTACCCCCCCCTGGGTAATCCGTNNNNNNNCCCCTCTAATAAATTTGC
CGGGCCCGGCTTAAATAACGAACCTCCACCTTTATCCCCGGAAAGAAAGG
GAAATCCGGCGGGGAAAAATTTCTGGGGGTTTTACTCCCCTAAAAAACCT
AAATAATTCCAAAGAAAGGGTCCCTGGGCCCCCGGGAAAAAAAAAAACCG
GGGCAACCCAAAAGGCCTGGGGGCCCCTTCCCCAAAACCTGGAAAAAATG
GGGGTGGCCCTCCCACACAAGGGGGGTTCCCCCCAAGAAAAAAATAGGGT
TTTCCGGGCCCCTTGGGGGGAAATTTTTTTATAAAAAAAAAATGGGGCAA
AAAAAAAACCCTTTATAAAAAATCGGGGGCCCGCGGGGACCAAAAGGGGG
GGGCACAAAAAAACACTCTTTAAAAAAATTTTTTTTTAAAAGGGGGGCCC
CCCCCCGCCCCAAAAAAATATATAAACCCCCCCCCCCCCACACGGGGGGG
GTGGGGGTGTGAAAAAAAAAGGGGGGGGGAAAAAAACCCCCCCCCTTTTT
TTTTAAAAAGAAAGGCGCGCGCGGGGGGGTGAAATATAACCCCCCCAAAA
AAAAAATCANNTTGTGGGGTCTCAAAAAAA
CCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAATGGGAGTGATAGAGACTGGT
ATAATTGGTCATGGAAAAATTAACCACTGGGTGAGGAATCCCTAGAACCT
TGCACCCCCATTCAAATATAGCTCTGGGCCCTGGTATCCAGGGAGCCCTC
TCTGGGGATAAGTTGTTTATCCTGATCCCTGTACCATGGCATGTGTACCA
TTTCCATAGGAGGCCAATCAAAGTGGCAAGACCTGAGAAAGATAATGTAT
TATTGACAAATCTCTGATGAACTCAGCTCAAATCTGTCTGTAGTGTCTGC
CTAGGAAACCATTTTTGACCCCCCCCCCCCACCTTCAAGACTGAGACCTA
CAGTACAACATTCTATGTTATGGCCATCATTTAATATCTCTGAGATAAGA
ACCCAAGTGTCCTTGCCCTTAACCTTTTCATGGGTCCTATGAAGATGCAG
CCTCCTTCTGACACATTTGTGTTTACACTGGCATCTATTATTAGATCTCA
TCTTTTCTAGGTGTCAAAGTTTGAGTCTGTGCCCTGGGATAGCTTCCATG
GCTCTATAGCTGTTGCATGGCAGGCTCAAAAATGGAAATCAGTGGTCATG
CAGAATAAGAAATACTTCCTCTACCTCAGTTTTTCCCTCCCTGCTGAATC
ACAGGTTGTGAGGTTAGATGCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_b03.g1 MSMg01no278_b03.g1 CHROMAT_FILE:
MSMg01no278_b03.g1 PHD_FILE: MSMg01no278_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:18 2005
         (628 letters)



>mm_chr17_36736750_36737779
          Length = 1030

 Score = 1011 bits (523), Expect = 0.0
 Identities = 600/633 (94%), Gaps = 16/633 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgggagtgatagagactggtataattggtcatggaaaaattaaccactgggtgaggaatc 64
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 205 tgggagtgatagagactggcataattggtcatggaaagattaaccactgggtgaggaatt 264

                                                                       
Query: 65  cctagaaccttgcacccccattcaaatatagctctgggccctggtatccagggagccctc 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctagaaccttgcacccccactcaaatatagctctgggccctggtatccagggagccctc 324

                                                                       
Query: 125 tctggggataagttgtttatcctgatccctgtaccatggcatgtgtaccatttccatagg 184
           ||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct: 325 tctagggttaagttgtttatcctgatccctgtatcatggcatgcgtaccatttccatggg 384

                                                                       
Query: 185 aggccaatcaaagtggcaagacctgagaaagataatgtattattgacaaatctctgatga 244
           | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 atgccaatcaaagtggcaagacctgagaaagataatgtattattgacagatctctgatga 444

                                                                       
Query: 245 act-cagctcaaatctgtctgtagtgtctgcctaggaaaccatttt----tgaccccccc 299
           ||| || ||||||||||||| |||||||||||||||||||     |    ||||||||||
Sbjct: 445 actacaactcaaatctgtctctagtgtctgcctaggaaac-----taggctgaccccccc 499

                                                                       
Query: 300 ccccca----ccttcaagactgagacctacagtacaacattctatgttatggccatcatt 355
           |||  |    ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 500 ccc--atagaccttcaagactgagacctacagtacaacattctatattatggtcatcatt 557

                                                                       
Query: 356 taatatctctgagataagaacccaagtgtccttgcccttaaccttttcatgggtcctatg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taatatctctgagataagaacccaagtgtccttgcccttaaccttttcatgggtcctatg 617

                                                                       
Query: 416 aagatgcagcctccttctgacacatttgtgtttacactggcatctattattagatctcat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aagatgcagcctccttctgacacatttgtgtttacactggcatctattattagatctcat 677

                                                                       
Query: 476 cttttctaggtgtcaaagtttgagtctgtgccctgggatagcttccatggctctatagct 535
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 678 cttttctaggtgtcaaagtttgagtctgtgccctaggatagcttccatggctctatagct 737

                                                                       
Query: 536 gttgcatggcaggctcaaaaatggaaatcagtggtcatgcagaataagaaatacttcctc 595
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 738 gttgcatggcaggctcaaaaatggaaatcagtgttcatgcagaataagaaatacttcctc 797

                                            
Query: 596 tacctcagtttttccctccctgctgaatcacag 628
           |||||||||||||||||||||||||||||||||
Sbjct: 798 tacctcagtttttccctccctgctgaatcacag 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1030
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1020
Effective search space:   630360
Effective search space used:   630360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)