BAC Information

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BAC

Clone NameMSMg01-278B14
Chromosome17 (Build37)
Map Location 23,314,562 - 23,314,906
singlet/doubletsinglet
Overlap geneZfp40
Upstream geneLOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248
Downstream geneLOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278B14.T7 (MSMg01no278_b14.b1)MSMg01-278B14.TJ (MSMg01no278_b14.g1)
ACCAG415816AG415817
length729730
length of high quality
(start - end)		341 (383 - 723)345 (386 - 730)
definitionCHROMAT_FILE: MSMg01no278_b14.b1 PHD_FILE: MSMg01no278_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:20 2005CHROMAT_FILE: MSMg01no278_b14.g1 PHD_FILE: MSMg01no278_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTTACGAATACCGAGTAGCTGAGAAGCACCTGAAAAAATGT
TCAGCATTCTTAATCATCAGGCAAATGCAAATCAAAACAATCCTGAGATT
CCAACTCACACCAGACAGAATGTCTAAGATCAAAAATTCAGGTGAGAGCA
GATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGATGGTGG
GGTTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGATTATGTTCCCCCCCGCCCCCCAGGACACATGCTCCACTAT
ATTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACCGAAAATGTGGTACATTTATTCAATG
GATTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGATGGACCTGGAGGACATCATCCTGAGTGAGGTAACCCAATCACTAA
AGAACTCTCATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAAC
TTAGAATACCCAAGATATAAGATACAATTTGCTAAACGCATGAAACTCAA
GAAGTACGAAGACCAAAATGTAGACACTT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCACTCATCCTTTGTATTTACCTA
CTTTGTACAATAAAAGCTCTTTGCTCTATCTAGAGACAACCAGAAAGAAG
AAAAATTCCTGTAATAATAGCCATAACTACATTTTTCAGTATTCTCTGCA
AGAACAACCAATCCTGTATACTAAAAGATTTCTCATCTAGATTTTAATCC
TAAATTCAGAGTTGAAAGAAACCTGAATATTCAAAGCAATGAAAGTCAGT
ATTGTGCAACAATTTGTTGTTGGAATACTTTGATTTTACTCCTTGATTAA
GCTATTTATCTATTTTCTGATCCCCCCCCCACCAAGAAGAAATTTAAAAA
TATGAAAAGAGCTGTTGGTAGTGTGCATGATGAGATTTTTTTTTCTTTTT
TGTTCACTGTTTTTGTATTCTTTTGAGATAAGGTCTCTAGTCCTAGCACT
GCATGCTTTTGAATTCTGTCATCAGGGAAGATGCAGCAAGTGGATCTGGC
GAGTTCCTGGCCAGCATGGGTTCCTAGCTAATGGACGCTACATGGTGTGA
CTCTTTTAAAAACACAGACAACAAAAAAGAGAAGTATTCTCCATATGGTT
TTTTAGAAAGCTTCTTTTTCAAATTGCATTAGCTTTTGATCACCTGTTTG
TTTAGTATTCTACAACATAGGTAGATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_b14.g1 MSMg01no278_b14.g1 CHROMAT_FILE:
MSMg01no278_b14.g1 PHD_FILE: MSMg01no278_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:20 2005
         (345 letters)



>mm_chr17_23314362_23315106
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagaaatttaaaaatatgaaaagagctgttggtagtgtgcatgatgagatttttttttc 60
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 545 gaagaaatttaaaaatatgaaaagagctgttggtagtgtgcatgttgggatttttttttc 486

                                                                       
Query: 61  ttttttgttcactgtttttgtattcttttgagataaggtctctagtcctagcactgcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttttttgttcactgtttttgtattcttttgagataaggtctctagtcctagcactgcatg 426

                                                                       
Query: 121 cttttgaattctgtcatcagggaagatgcagcaagtggatctggcgagttcctggccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cttttgaattctgtcatcagggaagatgcagcaagtggatctggcgagttcctggccagc 366

                                                                       
Query: 181 atgggttcctagctaatggacgctacatggtgtgactcttttaaaaacacagacaacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgggttcctagctaatggacgctacatggtgtgactcttttaaaaacacagacaacaaa 306

                                                                       
Query: 241 aaagagaagtattctccatatggttttttagaaagcttctttttcaaattgcattagctt 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 305 aaagagaagtattctccatatggttgtttagaaagcttctttttcaaattgcattagctt 246

                                                        
Query: 301 ttgatcacctgtttgtttagtattctacaacataggtagattaga 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttgatcacctgtttgtttagtattctacaacataggtagattaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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