BAC Information

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BAC

Clone NameMSMg01-278E19
Chromosome17 (Build37)
Map Location 89,372,941 - 89,373,226
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneFshr, LOC100043904, LOC100043906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278E19.T7 (MSMg01no278_e19.b1)MSMg01-278E19.TJ (MSMg01no278_e19.g1)
ACCAG415959AG415960
length701706
length of high quality
(start - end)
286 (70 - 355)307 (380 - 686)
definitionCHROMAT_FILE: MSMg01no278_e19.b1 PHD_FILE: MSMg01no278_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:36 2005CHROMAT_FILE: MSMg01no278_e19.g1 PHD_FILE: MSMg01no278_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATTTTCCATAACCATTGAATCTCTAACCAGTCAGTCAGTCTT
GTAGACTGTTTAATGAACCCTGGGTTTCTCTGGGAACAACTGAAGTTCAC
ATCATTCCATTCTGTTTGCTTCCTTTTCTGTGCAGAGAATGACCTGAATC
TATTTTGGATGTAGAGGGTTCGCAGTTGCCTCAAGGAGTCTTATAAGCAT
ATGCAAGTGAGGAGACAGAGACAGGCACTCTATACCTTCTTGTAGGTCTT
CAAGGTCATTTTTTCTGACTTTTCAGTAAACAGAAACAATGCATCAATAT
GAATGTATTTGTTATACCCGCCACCTCTTATAGCTGTTTCTAACCCCCCC
CCCTCCCTCTGTTTGTAGACAAGGTTTTACGGTGTAGCTATAGCTGTCCT
CAAAATCCCTCTGTAGACCAAGGTGGCCTCAATCTCACAGAGATGCACCT
GTCTCTGCCTCCTGAGTGCTGGGATTAAAGGAGGTTGTCACCACTACCCA
GCACACCTATGTTATTTAATCAACATGAATAGATAGTTTAAAGGTTGATT
TCCTGAGATCAGGGAAGCTGTCTCTCCTTTATAAAAATTTATTCATCTTT
TTACTATATATGTATGGGTATCTGACTCACATGTGCTGATACTGAAAAGT
T
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTAACACTGTACTCCATTTT
TAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTAT
ATAATGGATATTAGCTCTCTATTGGATGTAGGAATGGTAAAGATCTTTTC
CCAATGTGTTGGTTGCCATTTTGGCCTATTGATAGTGTCCTTTGCCTCAC
AGAAGCTTTGTAATTTTATGAAGTGCCATTTGTCAGTTCTTGATTTTAGA
GCATAAACTATTGTTCTTCTGTTCAGGAAATTTTCTCCTGTGCCCATATG
CTCTATGTTTTTCCCCCNTTACTTTTCCATTAATTTCAGTGTATCTGGTT
ATATGTGGAGGTCCTTGATACACTTGAATTTGAGCTTTGTAGAAAGAGAT
AAGAATGGATCAGTGTGCATTCTTCTACATGCTAACCACCAGTTGAGCCA
GCATCATTTGTTGAAAATGCTGTCTTTTTTCAACTGGATGTTTTTAGCTC
CTTTGTCAAAGATCAAGTGACCATATGTGACTGGTTTCATTTCTGGGTGT
TCAGTTCTATTCCATTGATCAACCTGTCTGTCACTGTACCAATACCATGC
CGTTTTTGTTTGTTTGTTTGTTTCACTATTGCTTTGTAGTACAGGTTGAG
GTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_e19.b1 MSMg01no278_e19.b1 CHROMAT_FILE:
MSMg01no278_e19.b1 PHD_FILE: MSMg01no278_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:36 2005
         (286 letters)



>mm_chr17_89372741_89373426
          Length = 686

 Score =  478 bits (247), Expect = e-139
 Identities = 276/291 (94%), Gaps = 10/291 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattgaatctctaaccagtcagtcagtcttgtagactgtttaatgaaccctgggtttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 201 ccattgaatctctaaccagtcagtcagtcttgtagactgtttaatgaattatgggtttct 260

                                                                       
Query: 61  ctgggaacaactgaagttcacatcattccattctgtttgcttccttttctgtgcagagaa 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaacaactgaagttcacatcactccattctgtttgcttccttttctgtgcagagaa 320

                                                                       
Query: 121 tgacctgaatctattttggatgtagagggttcgcagttgcctcaaggagtcttataagca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tgacctgaatctattttggatgtagagggttcgcagttgcctcaaggagtcttagaagca 380

                                                                       
Query: 181 tatgcaagtgaggagacagagacaggcactctataccttcttgtaggtcttcaaggtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgcaagtgaggagacagagacaggcactctataccttcttgtaggtcttcaaggtcat 440

                                                              
Query: 241 tttttc-----tgacttttcagtaaacagaaacaatgcatcaatatgaatg 286
                |     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 -----cacacctgacttttcagtaaacagaaacaatgcatcaatatgaatg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)