Query= MSMg01no278_f10.b1 MSMg01no278_f10.b1 CHROMAT_FILE:
MSMg01no278_f10.b1 PHD_FILE: MSMg01no278_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:38 2005
(309 letters)
>mm_chr17_57857936_57858645
Length = 710
Score = 555 bits (287), Expect = e-162
Identities = 302/307 (98%), Gaps = 2/307 (0%)
Strand = Plus / Plus
Query: 5 gaattcc-aatacacacgattacagaaagtatttgaggctggcaaaatcacaacccttct 63
||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 gaattccaaatacacacaattacagaaagtatttgaggctggcaaaatcataacccttct 263
Query: 64 agagcatgttgccaattacagtcaggtgctatggaaaatctgaagcagcaacatatccca 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agagcatgttgcaaattacagtcaggtgctatggaaaatctgaagcagcaacatatccca 323
Query: 124 catgtggaattaaaaaaacaaacaaacatattttcataaaatctctatgttttcaaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catgtggaattaaaaaaacaaacaaacatattttcataaaatctctatgttttcaaagaa 383
Query: 184 accaaaattatcactagactataaagcaatgctttgtgtgtaggtatgaggcgt-ttttt 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 accaaaattatcactagactataaagcaatgctttgtgtgtaggtatgaggcgtgttttt 443
Query: 243 taggaatataggtaggcaagtatgtgaacatgccagtccatgaacatgtgcatatgaagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taggaatataggtaggcaagtatgtgaacatgccagtccatgaacatgtgcatatgaagg 503
Query: 303 cctaagg 309
|||||||
Sbjct: 504 cctaagg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 710
Length adjustment: 9
Effective length of query: 300
Effective length of database: 701
Effective search space: 210300
Effective search space used: 210300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_f10.g1 MSMg01no278_f10.g1 CHROMAT_FILE:
MSMg01no278_f10.g1 PHD_FILE: MSMg01no278_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:38 2005
(281 letters)
>mm_chr17_58015645_58016325
Length = 681
Score = 484 bits (250), Expect = e-141
Identities = 273/282 (96%), Gaps = 5/282 (1%)
Strand = Plus / Minus
Query: 1 cacaggatacctatgtggtcctatgagagagcacactcttaacatgcctgactccctggg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 577 cacaggatacctatgtggtcctatgagagagcacactcttaacatgcatgactccctggg 518
Query: 61 ttaaagagtcagtacctcaaacaacaacaacaacaacaaaacacaatgaattccttggtg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttaaagagtcagtacctca---aacaacaacaacaacaaaacacaatgaattccttggtg 461
Query: 121 gatctttaggttggaggaacatgttgcctattacatgctgggaagaacgtttactataga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 460 gatctttgggttggaggaacatgttgcctattacatgctgggaagaacgtttaatataga 401
Query: 181 cttaaatgtc-aagatttccttctggactgtgactttggatgtaacctgtatgaagactg 239
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cttaaac-tccaagatttccttctggactgtgactttggatgtaacctgtatgaagactg 342
Query: 240 agcactttctctctcctaagcactcatgatgccctcatgtaa 281
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agcactttctctctcctaagcactcatgatgccctcatgtaa 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
