BAC Information

Click to search

BAC

Clone NameMSMg01-278G03
Chromosome17 (Build37)
Map Location 20,622,846 - 20,623,505
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805
Downstream geneV1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278G03.T7 (MSMg01no278_g03.b1)MSMg01-278G03.TJ (MSMg01no278_g03.g1)
ACCAG416022AG416023
length720734
length of high quality
(start - end)
236 (380 - 615)658 (77 - 734)
definitionCHROMAT_FILE: MSMg01no278_g03.b1 PHD_FILE: MSMg01no278_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:42 2005CHROMAT_FILE: MSMg01no278_g03.g1 PHD_FILE: MSMg01no278_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGACTAGGCGGAATT
CATCGACATAGCGCAAACATCATGGTACAGGAGCCTAGGGACAAGCTGAA
CTAGAATACAGTAATCTCTAGAAGTATTAAAAACAGAAGTAGATACACAG
GGAGTGAGACCAGTGTTGCAAGCCCACACTGTGTCTAAGGGGGGCACTAG
GTACTGACCACTGTCGGAAAACTGGATATGTTTGGTCTGATTATAGAGGT
GCCGCCTGCCATGTGGCACTTGACCCAAGCAAAGTCTGCTCCCTGAAACA
GCTGCCAGAGTCTGTTTTCTGTTTTCCCCCCAAGGGCATTGAGAATGATC
TGCATTTTTATTATAGGTCCTGACTTGGGCGATTCCCTCATAATAGGGGG
GGACTAGAGGCATAGCACAGCCAGCAAGACTGAGTAATGTTGGGATTAGT
ATGGTTGAGGACCAGGAATGCCCCTTGTACCAGGCTAAACAGGCGATTCT
CGGTGTCTGGGGGCCAGGAAGTGGTTGGGGCTAGATCTAGGGAAGGAGTG
TAAGCATCAGTAGGGCCACGTAAAGTAGGCCTTGGGAGAGTAGGTCTTGT
AGGGGGTCTCTGAGGCCTTTTAACTAATACGGATTAGGCCCCACTGACTG
GTCTGGAGGACTTTCTATCTTCAGCTGAACCTTAAAAGTGAATCCAGGGT
CTGTCCCTGTCACATAAAAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTTTATTGGTGTTATAGTTG
CAATTATTGTTTCACTTACATGGACATGGAAATTATAAAATAAGCCTACA
CATTAAGGAAATATAACTTATTAATTATAGTAGAATATATATTGTACTTA
TGCATGAATATATATTTATATTTATGTGTGTGTATATATGAAATGAAAAC
AATTCAATCTTCTGACCAGAATAAAACTGAGATATAATTTGATATATGTA
AACTACAAATATAGTGGCATATGATTTTTAGTAAATTTGATTTGGTACCT
AGAATGAAAGGGTAGAATAAGTATTTTGGCTTCAAACACAAAATATCTAA
ATCCAGGCATGTTAAGTGACATATTTGCAATTTAGCCAAGTAATATTAAT
ATAAGCAAATCAAACTATAGGAGTGATGTAGAGATTTAATACATACATGT
GTATTATTTATCTCTCATAATGCTTTAGATATTGTTTACTCTTAATTTTT
CCTAATATTTATGGTGGGTAAAGGCTTGGTTATCAGCCAAGTAATCTTAA
GAAGCATGGAAGTTTTCTAAATTGTATCTCACTAGGAAGCCTTTGTGATA
TGGAAGACAGAAGGTATCACCATAAAGGGGATCATGAAATGACATATATT
TCCCTTGTTTTTCTAAATACATTATTTTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_g03.g1 MSMg01no278_g03.g1 CHROMAT_FILE:
MSMg01no278_g03.g1 PHD_FILE: MSMg01no278_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:42 2005
         (658 letters)



>mm_chr17_20622648_20623705
          Length = 1058

 Score = 1137 bits (588), Expect = 0.0
 Identities = 642/660 (97%), Gaps = 2/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcactttattggtgttatagttgcaattattgtttcacttacatggacatggaaattat 60
           |||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 199 ttcactttattgctgttatagttgcaattattgtttcacttacatgaaaatggaaattat 258

                                                                       
Query: 61  aaaataagcctacacattaaggaaatataacttattaattatagtagaatatatat-t-g 118
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 259 aaaataaacctacacattaaggaaatataacttattaattatagtagaatatatatatca 318

                                                                       
Query: 119 tacttatgcatgaatatatatttatatttatgtgtgtgtatatatgaaatgaaaacaatt 178
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 319 tacttatgcatgaatatatatttatatatatgtgtgtgtatatatgaaatgaagacaatt 378

                                                                       
Query: 179 caatcttctgaccagaataaaactgagatataatttgatatatgtaaactacaaatatag 238
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 caatcttttgaccagaataaaactgagatataatttgatataagtaaactacaaatatag 438

                                                                       
Query: 239 tggcatatgatttttagtaaatttgatttggtacctagaatgaaagggtagaataagtat 298
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggcatatgatttttagtaattttgatttggtacctagaatgaaagggtagaataagtat 498

                                                                       
Query: 299 tttggcttcaaacacaaaatatctaaatccaggcatgttaagtgacatatttgcaattta 358
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttgggttcaaatacaaaatatctaaatccaggcatgttaagtgacatatttgcaattta 558

                                                                       
Query: 359 gccaagtaatattaatataagcaaatcaaactataggagtgatgtagagatttaatacat 418
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcaaagtaatattaatataagcaaatcaaactataggagtgatgtagagatttaatacat 618

                                                                       
Query: 419 acatgtgtattatttatctctcataatgctttagatattgtttactcttaatttttccta 478
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 acatgtgtattatttatctctcataatgttttagatattgtttactcttaatttttccta 678

                                                                       
Query: 479 atatttatggtgggtaaaggcttggttatcagccaagtaatcttaagaagcatggaagtt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atatttatggtgggtaaaggcttggttatcagccaagtaatcttaagaagcatggaagtt 738

                                                                       
Query: 539 ttctaaattgtatctcactaggaagcctttgtgatatggaagacagaaggtatcaccata 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 739 ttctaaattgtatctcactaggaagcctttgtgatatggaagacagaaggtatcacctta 798

                                                                       
Query: 599 aaggggatcatgaaatgacatatatttcccttgtttttctaaatacattatttttttaaa 658
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 799 aaggggatcatgaaatgacatatatttcccttgtttttataaatacattatttttttaaa 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)